Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2609 ATGGCGGGTCGATTCTTCGGATCTTCGGCTGCTTCGATCGCCATGATCGTTACCAATACGCCTTCTCAAGAACTCGCCCTAACCAACCTCGCCTACATCTCCGCCTCCGATCTTCCAAAATTCGCCGTTCCCGGTCACAGCAACCTCTACCTCGCTTCCATCGGCGATGTCTTCGTTTTCTCTCTCTCAGCTCATGAAAGCATACGCGGTGGTCACATTGCTTTGAATTCCATTCAACGTCGATGTGCAAAGGTTTCTGCAGCTGAATCCATAGATGTGACCCGATTCGTGCCACCTGAAAACTTCAACCTGGCCGTGCTAACTGTTGAATTGGACTTCATTAAAAGGGTTGGAAGCAGGAATGAACAGATTGATGCTATTATACTAGCCAAACAACTTCGGAGAAGACTTAATAACCAGGTAATGACAGCAGGGCAGAAAGTGTTATTTGAGTTTCAGGGAAATAATTATAGCTTTACAGTCCGTGAAGCTACTGTTGAGGGCCAGGGAAAGTCTAGCTCTATTGAAAGAGGAATGATTTTAGATGACACATTCTTTGTATTTGATGCGCCACGTGATAGTGGAATTAAGATTATCAATCAGCGCGAAGGTACTACTAGCAACATTTTTAAGCAGAAAGAGTTTAACCTAGAGTCTCTGGGTATCGGTGGCCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGTCCTCCTGGAACTGGAAAGACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGCAAGGATCCAAAGATTGTAAATGGCCCGGAAATTTTGAGCAAATTTGTGGGTGAAACTGAAAAGAATGTAAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAAGAACCTAGGGGATGAAAGTGATTTGCATGTTATTATATTTGATGAAATTGATGCTATTTGTAAGTCCAGAGGCTCAACTCGAGATGGTACAGGGGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAATCACTAAACAATGTTTTGCTTATTGGAATGACAAACAGAAAGGACATGCTTGATGAAGCACTCTTAAGACCAGGGCGGTTGGAAGTCCAAGTTGAGATAAGTCTCCCGGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCGAACTAAAAACTACAGTGGTGCGGAACTTGAAGGTGTTGTGAAAAGTGCTGTTTCATATGCTTTAAATAGACAATTGAGCCTTGAAGATCTCACTAAGCCAGTTGAGGAGGAAAACATTAAGGTTACGATGGATGACTTTTTGAATGCACTTCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGATGATCTTGAGCGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTTACCAGAGAGCAATGCTAGTTGCGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCCCTTGTTACTTGTCTTCTGGAAGGTTATCGTGGCAGTGGTAAAACCGCACTTGCAGCTACTATAGGCATCGATAGTGACTTCGCATATGTCAAGATAATTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACTAAATGTGCTCAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCTTTGAGTGTCATTGTTCTTGATGACATTGAGAGATTATTGGAGTATGTTCCTATTGGTCCTCGTTTCTCAAACCTTATTTCTCAGACACTACTGGTTTTGCTCAAGAAACTTCCCCCAAAGGGGAAGAAACTGATGGTAATTGGAACTACTAGTGAAGTAGATTTCTTGGACTCAATTGGTTTTTGTAATAACTTCTCGATAACTTACAATGTTCCTACATTGAGCAGAGATGATGCGAAGAAGGTCCTTGAACAGTTGAATGTTTTTGCGGATGAAGATATTGATTCTGCTGCAGAGGCATTGGATAATATGCCTATCAAGAAGCTATACATGCTAATTGAGATGGCAGCGCAAGGTGCACAAGGTGGATCAGCCGAAGCTATCTACTCTGGCAAAGAGAAAATTAATATATCTCATTTCTTCGATTGCCTTGGAGATGTTGTCAGATTAATATAA 2241 0.4186 MAGRFFGSSAASIAMIVTNTPSQELALTNLAYISASDLPKFAVPGHSNLYLASIGDVFVFSLSAHESIRGGHIALNSIQRRCAKVSAAESIDVTRFVPPENFNLAVLTVELDFIKRVGSRNEQIDAIILAKQLRRRLNNQVMTAGQKVLFEFQGNNYSFTVREATVEGQGKSSSIERGMILDDTFFVFDAPRDSGIKIINQREGTTSNIFKQKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKDPKIVNGPEILSKFVGETEKNVRDLFADAEQDQKNLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLVAEQVKVSKGSPLVTCLLEGYRGSGKTALAATIGIDSDFAYVKIISAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVPIGPRFSNLISQTLLVLLKKLPPKGKKLMVIGTTSEVDFLDSIGFCNNFSITYNVPTLSRDDAKKVLEQLNVFADEDIDSAAEALDNMPIKKLYMLIEMAAQGAQGGSAEAIYSGKEKINISHFFDCLGDVVRLI* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2609 746 Gene3D - 12 96 - -
Psa7g2609 746 SUPERFAMILY Cdc48 domain 2-like 99 203 IPR029067 -
Psa7g2609 746 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Psa7g2609 746 PANTHER VESICULAR-FUSION PROTEIN NSF 61 745 IPR039812 GO:0016887|GO:0035494
Psa7g2609 746 PANTHER VESICULAR-FUSION PROTEIN NSF 1 39 IPR039812 GO:0016887|GO:0035494
Psa7g2609 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 709 IPR027417 -
Psa7g2609 746 PANTHER BNAA03G50350D PROTEIN 1 39 - -
Psa7g2609 746 PANTHER BNAA03G50350D PROTEIN 61 745 - -
Psa7g2609 746 Pfam ATPase family associated with various cellular activities (AAA) 258 398 IPR003959 GO:0005524|GO:0016887
Psa7g2609 746 Pfam ATPase family associated with various cellular activities (AAA) 539 653 IPR003959 GO:0005524|GO:0016887
Psa7g2609 746 Gene3D - 99 198 - -
Psa7g2609 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 497 IPR027417 -
Psa7g2609 746 CDD AAA 256 399 - -
Psa7g2609 746 Gene3D - 400 487 - -
Psa7g2609 746 SMART AAA_5 254 401 IPR003593 -
Psa7g2609 746 SMART AAA_5 534 667 IPR003593 -
Psa7g2609 746 Gene3D - 496 667 IPR027417 -
Psa7g2609 746 SUPERFAMILY ADC-like 13 99 IPR009010 -
Psa7g2609 746 Pfam AAA+ lid domain 425 480 IPR041569 -
Psa7g2609 746 Gene3D - 208 399 IPR027417 -
Psa7g2609 746 Pfam Cell division protein 48 (CDC48), domain 2 123 168 IPR004201 -
Psa7g2609 746 CDD AAA 528 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2609 Psa-Chr7 186908198 186922120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2609 222 473 Calmodulin-binding Proteins AT3G56690 33.071 1.36e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2609 K06027 - gmx:100779259 1248.42