Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2602 ATGCCGTCACAGAAGCGTTCTTTCGAAGAGGCTCTCGAAGAGAATGAAGACTCTGAAAATGAGATAAACAACGACGAGCAACCTAAAGATGAAGACGAATCAGATCAAAGCCATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTTGGTATCATTCGAAAAACAAGAACCGTTATGGAATGCCTTCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGTCCTGCTTGCCGTACTCATTGTGCTAGCCGACGCTCATTGAGAGATGACCCAAGCTACGATGCCTTGATTGCTGTTATGTATCCAGATATTGACAAGTATGAGGAACAGGAATTGGCTTTGCATGAGGATGAGATGGCTCGCCATAAGCAGTTTCAAGCATCCATTGCCCAAACACTAAAACGGCAATCAGAAGCGTTGAGTAAAAAACGAAATGCCAAAGCAACATCAGTGGCTTTTGTGAGGAGATCCCAAGGCAACTCTCGAACTTCGAATCTCAAACGTCGAAGAAACTTTAGAAATGCTGGTGACTTTCAGGTATCCAATGACAACAAGGGTATGGATGATATTGATGGGGGAAAGGGATCATCTTCTGATGATGGGCAGACAGAAACCCAGCCAAGAAGATGCAAAAGAGGTGGAGAACAAGAAGCACAATTTCCTCAGCATTCTCCCTCTACTGAACCAGATGGAGTTGGTGATGAAAATACTCCAGAAGTAAATAGGGAAATCCTAAGTGCATCTGGCACACTTTCCTGGGGAAAAAATGGTCACCGGAGTCACAGCCGAGTCAATGGAAAGAATGCCAAAAACAACCGCATCTCCAAATTGGTTGAACATATTCGTAACTCAGCAAAAAATGGTTATGAGCTGCCTACCTTTCTCATGCTTGTCTCGTTGGATGAGCAAAGAATACCAAGTTTGGAGGATCCATGCCTTACTTGCAAGCCTACCATGTCAGTCAAGATACTGCGCAAGCATGTAGCAAATGAAACTGCCATGCCTGAGGCTGAAGTTGACTTGTGGTTGATACTCAAGCCACGATCTAGCTTTGAAGAAGGTGAAAGAACCATCGATCCAAACACAGATAATTTACGCATTCTAGAAGACCAAGAAACATTGGCCGAATTGCTGGGAACTTATGAAAATACCAGCCATGGTTATCTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGACACAGTTGAGTTAAGCTGA 1242 0.4396 MPSQKRSFEEALEENEDSENEINNDEQPKDEDESDQSHVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPSYDALIAVMYPDIDKYEEQELALHEDEMARHKQFQASIAQTLKRQSEALSKKRNAKATSVAFVRRSQGNSRTSNLKRRRNFRNAGDFQVSNDNKGMDDIDGGKGSSSDDGQTETQPRRCKRGGEQEAQFPQHSPSTEPDGVGDENTPEVNREILSASGTLSWGKNGHRSHSRVNGKNAKNNRISKLVEHIRNSAKNGYELPTFLMLVSLDEQRIPSLEDPCLTCKPTMSVKILRKHVANETAMPEAEVDLWLILKPRSSFEEGERTIDPNTDNLRILEDQETLAELLGTYENTSHGYLVMAYKRKLQNSDTVELS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2602 413 MobiDBLite consensus disorder prediction 143 242 - -
Psa7g2602 413 Pfam Zinc finger, C3HC4 type (RING finger) 44 84 - -
Psa7g2602 413 Coils Coil 1 21 - -
Psa7g2602 413 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Psa7g2602 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 115 IPR013083 -
Psa7g2602 413 PANTHER OS11G0578200 PROTEIN 12 405 IPR044592 -
Psa7g2602 413 MobiDBLite consensus disorder prediction 1 38 - -
Psa7g2602 413 SUPERFAMILY RING/U-box 44 99 - -
Psa7g2602 413 MobiDBLite consensus disorder prediction 13 30 - -
Psa7g2602 413 PANTHER OS11G0578200 PROTEIN 12 405 - -
Psa7g2602 413 SMART ring_2 45 84 IPR001841 -
Psa7g2602 413 ProSiteProfiles Zinc finger RING-type profile. 45 85 IPR001841 -
Psa7g2602 413 CDD RING-HC_RING1_like 45 85 - -
Psa7g2602 413 MobiDBLite consensus disorder prediction 255 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2602 Psa-Chr7 186630048 186635466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2602 43 185 C3H Transcription Factor Family AT2G30580 26.531 2.11e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2602 K10695 - zju:107425269 421.009