Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2524 ATGAACGACTTGTTTTCAAACTCCTTCAAGAAATACACTGATTTGAAGGAACAAGCTTACATTGATGATGTAGAAACAGGAAATAGAGAAAGTGTGAATCTCGACAAATTCTTTGAAGATGTCGAGAGTATAAAAGCAGACATGAAAGCAATTGAAATGTTGTATAGGAAAATACAAGAAGCTAATGAAGAAAGTAAAACCGTGCACAACGCTAAAACAATGAAAGATCTTCGCGCCCGAATGGACAAAGACGTGGAGCTAGTTCTTAAACGCGTTAAAGTAATTAAAGGAAAACTCGAAGCGTTGGATCGGTCGAATGCGGCTAATAGAAAGATTGCAGGGTGCGGTCCAGGATCATCAGCCGAAAGAACTAGAACGATGGTAGTTAGTGGATTAGGGAAGAAACTGAAAGATATGATGGATGAGTTTCAAGGTTTGAGAGCAAGAATGCAAGATGAGTATAAGGAAACAGTGGAGAGAAGATATTTTACAATAACGGGAGAGAAAGCAGATGAAGAAACTATAGAGAATTTAATATCGAGTGGAGAAAGTGAAAATTTTATGCAAAGGGCAATTCAAGAGCAAGGGAGGGGACAGATAATGGACACGATATCGGAAATTCAAGAAAGACATGGCGCTGTTAAGGAAATAGAGAAGAATCTGGTTGAGTTGCATCAAGTTTTTTTGGATATGGCTGCTCTAGTAGAGTCGCAAGGGCAACAACTTAATAATATTGAGAGCCATGTTGCACATGCTAGTTCTTTTGTAAGAAGGGGGACAGAACAACTTCAGGAGGCTAGAGTGCAGCAAAAGAGTTCTAGGAAGTGGACATGTTATGCCATACTTCTTGGTATTGTTCTTGTTATTGTGATCTTGTTTCCATTCTTGACATCACTTATACCTCATTTGTTAAAAGGAAGGAATGAGGTACCAGTGAAGACTACTCAGGGAAATATTAATTGA 963 0.3863 MNDLFSNSFKKYTDLKEQAYIDDVETGNRESVNLDKFFEDVESIKADMKAIEMLYRKIQEANEESKTVHNAKTMKDLRARMDKDVELVLKRVKVIKGKLEALDRSNAANRKIAGCGPGSSAERTRTMVVSGLGKKLKDMMDEFQGLRARMQDEYKETVERRYFTITGEKADEETIENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHGAVKEIEKNLVELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARVQQKSSRKWTCYAILLGIVLVIVILFPFLTSLIPHLLKGRNEVPVKTTQGNIN* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2524 320 CDD SynN 34 191 IPR006011 GO:0016020
Psa7g2524 320 Pfam SNARE domain 241 292 IPR000727 -
Psa7g2524 320 Gene3D - 193 295 - -
Psa7g2524 320 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Psa7g2524 320 PANTHER SYNTAXIN 6 296 IPR045242 -
Psa7g2524 320 SMART SynN_4 29 155 IPR006011 GO:0016020
Psa7g2524 320 Coils Coil 44 64 - -
Psa7g2524 320 CDD SNARE_syntaxin1-like 203 265 - -
Psa7g2524 320 SMART tSNARE_6 199 266 IPR000727 -
Psa7g2524 320 Gene3D - 34 161 - -
Psa7g2524 320 Coils Coil 136 156 - -
Psa7g2524 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Psa7g2524 320 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa7g2524 320 PANTHER SYNTAXIN-124-RELATED 6 296 - -
Psa7g2524 320 Pfam Syntaxin 36 239 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2524 Psa-Chr7 179620051 179621574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2524 1 304 SNARE and Associated Proteins AT1G61290 75.329 9.51e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2524 K08486 - gmx:100818999 509.99