Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2484 ATGGGAAGAATACCTTGTTGTGATAAGAATGGTCTCAAGAGAGGACCATGGACACAAGAGGAAGACCAAAAACTCATTGATTACATCCACAAACATGGCTATGGAAACTGGAGATTACTCCCAAAGAATGCTGGGTTACAAAGATGTGGAAAGAGTTGTCGTCTTCGTTGGACAAACTATCTACGACCGGATATAAAGCGAGGTCGATTCTCTTTTGAAGAAGAAGAAACCATAATTCAACTACATAGCATCCTCGGCAACAAATGGTCTGCAATTGCTTCTAGGCTACCGGGAAGAACAGACAATGAAATCAAGAATTATTGGAACACTCACATTAGAAAAAGACTCTTGAGGATGGGAATTGATCCAGTGACACATAATCCAAGACTTGATCTTTTGGACCTTTCTTCTATCCTAAACTCATCTTTTTATGCTTCTGCTTCACTGATGAACCCTGAGATTCTAAAGTTGGCTGCATCACTCTTCTCCTCTCAAAATGGACAAGAGAATCATCATCAAATTGATCAGAATCAACAAATTATCTCACACTTGGTTCAAACTCAAATTCAGGACTCCATTCATCAAGAAGCTTACAACAAATTGTTGAATCCAAATCCACCTTGTGATAGTTCAATGCTTTTCAATCAATCACACTTGGTTGAATCCAATGAGAATCTATATTCGTCACCAGTTTTACCTGAGTTTGGCTTCCAACAACAACATGAACATGCTCAATTAAGTGATTTGCATTGCAATGGAATTGCTTCAAGTACTATAACAGATGATTTTGTTCATCAAATACCAAGCTATGGAAATGATCTAATTATGGAACCTCACATATCAGAAACCTCAACATTTCATTCCAATAACATCAACGAAAGCTTCAACTTCGCTTCGGTTCTATCTACGCCTTCGTCAAGTCCGGTACGGTTGAATTCGAATTCGACGTATATCAATGGAACCAGCATTGAAGATGAGACAGAAAGCTATGTTAGCAACAACATGTTTGAATTTCAAATTTCAAACATCTTAGGTGTGAATGAGTTCATGTAA 1053 0.3789 MGRIPCCDKNGLKRGPWTQEEDQKLIDYIHKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDLSSILNSSFYASASLMNPEILKLAASLFSSQNGQENHHQIDQNQQIISHLVQTQIQDSIHQEAYNKLLNPNPPCDSSMLFNQSHLVESNENLYSSPVLPEFGFQQQHEHAQLSDLHCNGIASSTITDDFVHQIPSYGNDLIMEPHISETSTFHSNNINESFNFASVLSTPSSSPVRLNSNSTYINGTSIEDETESYVSNNMFEFQISNILGVNEFM* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2484 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa7g2484 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 344 - -
Psa7g2484 350 CDD SANT 69 112 IPR001005 -
Psa7g2484 350 CDD SANT 16 61 IPR001005 -
Psa7g2484 350 PANTHER TRANSCRIPTION FACTOR MYB41 1 344 - -
Psa7g2484 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa7g2484 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Psa7g2484 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa7g2484 350 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa7g2484 350 Gene3D - 14 66 - -
Psa7g2484 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Psa7g2484 350 Gene3D - 69 116 - -
Psa7g2484 350 SMART sant 66 114 IPR001005 -
Psa7g2484 350 SMART sant 13 63 IPR001005 -
Psa7g2484 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2484 Psa-Chr7 175463484 175465263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2484 1 350 MYB Transcription Factor Family AT4G21440 49.741 3.19e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g2484 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2484 K09422 - gmx:778071 431.024