Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2482 ATGAAGAAAGAATCAGCATCGGCGAACCAGGAGGTTCCACCGGACCATCTCCGGTGCGGACGAACCGACGGGAAGAAATGGCGGTGCAAGCGGAGAGTGATGGATGATCTGAAGCTCTGCGAGATTCACTACCTCCAGGGAAAGCATCGTCAATACAAAGAGAAAGTTCCTGAGTCTCTGAAGCTTCAGAGGAAGCGGAAAAACGTGGATGAAACTGTTGATATCGACAATGCGGAAACGGAAACAGCTAGGGCACAGAGTGAGTTCAAAATGGAGCTGAGAAAGATCAAGAAGAAGAAGCGGAAGTTCTCGGAGGATTCAGAATCGTTAACCGACACTCCTTCTGCTTCTGCATCTGCATCTGCATCTGCTCATGCTACTGTTTCTGTTAGGAAGAAAACAATGAAGCAATGTGACACGCAATTGGATCTTATTAGAATGGTTCTGGAGAGGGAAGTTGAGAAGAGAAAAGGGAACAGTAGCAGCAACAACAAGAAGAGAAAGAAAAAGAAGAAAAAGGAGATTAAACCAGAAGAAATGGAATTGCGTCATTATGATGAAGGGGAATTAAGGAAGGAGTTACCGAATGGTGTTATGGAAATATCTCCGGCTTTAATGCCACATGATTATGACAATGTGAATTCTCATTGTGATGTGAAAGTTGCTGCTGAGAATAAGATTGTAGCTGTAACACCGCGTTACTTCAGGTCCAAGAATATTGATAGGGTTGCTGTTGGCAAATTGCAGGTTGTGCCTAATGGATTAAACTTGAAGAATGGGGATACTAAGAGGAAGAAGTGTCACTGGTGCCAGAGAAGTGATTCTGTGAATCTCGTCCAGTGTTCTAGCTGTCGAAAGGAGTTTTTCTGCTTTGGATGCATAAGAGAGCAGTATTTGGACACACGAAGCGAAGTTAAGAAGGCTTGTCCAGTTTGTCAAAGAACTTGCACATGTAAGGACTGTTTGGGAAGTCAATGTAACAACAGTGAAAGTAAGCCTTGTTTGACTGGTAAAATTAGAGTTGATAGAATACTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCGAATAAGTGAAGAACGCGAAACTGAGCTAGAAACAAAAGCAAAATTTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTACAATGAAAATATTAATTGTAATCACTGCAGAACACCCATCCTGGATCTCCATAGAAGCTGTGTTAGTTGTTCATATAGCCTATGCTTAAGTTGTTGTGAGAAATTATGTTCAGGAAGAACTTGTGGAGAAATTAGCTCATCTATGTTGAAGCTACCTGATCAGATAGACACCTGTGTTGACAATGAGAGCCATATTTTGGATCAGAATGACATCTCTTGTGATAAACTAATTGGTATTTCAACATTGCCCGAGTGGACAAATTGTAATGATATTGAAAAAGTATCATGCCCTCCTATGGAGCTTGGTGGTTGTGGTACAGGCATGCTTGATTTAAGATGCATTTTCCCCCCGACTTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCCGAAACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTTTTGACACTGACCTCAATACTAACCGATATAACCAGTTGCAGAAATCAGCTGAGAGAGAAGATTCATCGGACAATTGCTTGTTTTGTCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCATTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTGCATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAAGTATGAGAATAATAAAGAGTTACTTGAATCCTGTTTAGATTGGTGTGAGGTGGAAATAAACATTAGGCAGTATTTTACAGGGTCTCTCAAAAGTCGTCCTCAGAGAAACACTTGGCATGAGATGTTGAAACTGAAAGGATGGCTGTCTTCCCAAGTATTCAAAGAGCAGTTTCCAGCTCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCTGTGTCTGGTCTTCTAAATTTAGCTGCAAATTTGCAACACGGGAGTGCCAAACATGACATTGGGCCATATGTTTATATTTCGTATGGCTGTGATGACATGGAAGCTGATTCTGTGACAAAACTCTGCTGTGACTCAAATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCTTACAAAAATAAGGAAATTGCTGAAGAAGCACAAAGCTCTGTGTCAAGTGGAGTATGTTGCTGCTGAGCAGTTACCGGGACAGAATGCTAAAGCAATGATATTATCACATGCTGAAGAAATGGAACAAAAAGGTTTGCGGAGTACGGGGAAAGAAGGAATGGAATTTTTCAGGAGAGTCGATAGAATATCTTGCATCTCAACTGAAGCTAAAAAAGCTTCTACTCAGAGTATAGACAGCAATATTTCTCAGGATGGAGAACGCAGTATCTTCGCTGATTCTGAACCTTCGCTTCATGGGACTGTTCATACCGGCAATTTGTCAGCACATGATAATCCTAGAAGTCCCTCTGAAAGCTCCAACAGTTGTAAGAAAAAGTTTACCGAGCATTCAGGCGCCCAGTGGGATGTCTTTCGTAGACAAGATGTGCCAAAGCTCATAGAATACATTAAAAGACACTATGATGAACTTACTTATACCCACGACTCTCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATCTTTCTTGACAGTACTCACAAAGTGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGCTGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTAACCGAGTGTATCCAGTTGATTGATGAAGTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTACACAGCATGAGTACAGCAATTAAAGAAATACGCCAGCTTACATGCAAAACATGA 3141 0.4113 MKKESASANQEVPPDHLRCGRTDGKKWRCKRRVMDDLKLCEIHYLQGKHRQYKEKVPESLKLQRKRKNVDETVDIDNAETETARAQSEFKMELRKIKKKKRKFSEDSESLTDTPSASASASASAHATVSVRKKTMKQCDTQLDLIRMVLEREVEKRKGNSSSNNKKRKKKKKKEIKPEEMELRHYDEGELRKELPNGVMEISPALMPHDYDNVNSHCDVKVAAENKIVAVTPRYFRSKNIDRVAVGKLQVVPNGLNLKNGDTKRKKCHWCQRSDSVNLVQCSSCRKEFFCFGCIREQYLDTRSEVKKACPVCQRTCTCKDCLGSQCNNSESKPCLTGKIRVDRILHFHYLICMLLPVLKRISEERETELETKAKFKGKNISDIQIKQVEFGYNENINCNHCRTPILDLHRSCVSCSYSLCLSCCEKLCSGRTCGEISSSMLKLPDQIDTCVDNESHILDQNDISCDKLIGISTLPEWTNCNDIEKVSCPPMELGGCGTGMLDLRCIFPPTLLKEMEVKAEEIVCSYDFPETLDKSSSCSLCFDTDLNTNRYNQLQKSAEREDSSDNCLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQSASNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKSRPQRNTWHEMLKLKGWLSSQVFKEQFPAHFSEVIDALPVQEYMNPVSGLLNLAANLQHGSAKHDIGPYVYISYGCDDMEADSVTKLCCDSNDVVNIMTHSADVPLSTEQLTKIRKLLKKHKALCQVEYVAAEQLPGQNAKAMILSHAEEMEQKGLRSTGKEGMEFFRRVDRISCISTEAKKASTQSIDSNISQDGERSIFADSEPSLHGTVHTGNLSAHDNPRSPSESSNSCKKKFTEHSGAQWDVFRRQDVPKLIEYIKRHYDELTYTHDSHKKMVHPILDQSIFLDSTHKVRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDEVRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCKT* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2482 1046 ProSiteProfiles JmjC domain profile. 700 1009 IPR003347 -
Psa7g2482 1046 SUPERFAMILY Clavaminate synthase-like 580 1036 - -
Psa7g2482 1046 MobiDBLite consensus disorder prediction 1 20 - -
Psa7g2482 1046 Pfam JmjC domain, hydroxylase 895 987 IPR003347 -
Psa7g2482 1046 PANTHER PROTEIN B160 10 1045 - -
Psa7g2482 1046 MobiDBLite consensus disorder prediction 109 133 - -
Psa7g2482 1046 MobiDBLite consensus disorder prediction 98 133 - -
Psa7g2482 1046 MobiDBLite consensus disorder prediction 870 890 - -
Psa7g2482 1046 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Psa7g2482 1046 Pfam WRC 14 55 IPR014977 -
Psa7g2482 1046 MobiDBLite consensus disorder prediction 153 178 - -
Psa7g2482 1046 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 1045 IPR045109 GO:0032454|GO:0033169
Psa7g2482 1046 Gene3D Cupin 572 1018 - -
Psa7g2482 1046 ProSiteProfiles Zinc finger RING-type profile. 267 313 IPR001841 -
Psa7g2482 1046 MobiDBLite consensus disorder prediction 870 886 - -
Psa7g2482 1046 SMART cupin_9 681 1009 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2482 Psa-Chr7 175256337 175262625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2482 8 53 GRF Transcription Factor Family AT4G37740 50.000 2.94e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa7g2482 JmjC 3.5e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2482 K15601 - gmx:100810673 1405.96