Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2472 ATGGAACAAGGAAATGACCATAGACTATATGTGTCTATAGAGGATTTAGGTTTCAATGGTGAAAATTGTAACAATAGAGGAAAATTGAGAAAGATTAACCACTATGATGATGATACACATGTGTACACATCAAAGAACCTTGAGACAGAAAGAAAAAGGAGGGAGAAACTCAGTAGCAGACTTTTGATGCTTCGTTCTTTAGTACCAAACATCACAAATATGAACAAAGCAAGCATTATTGAAGATGCTATCACTTACATGCAAAAATTGCAAAATGAAGTTAAGAGTCTCACGGAAGAGCTTCATGATATGGGAGGAACAAAAGAGAAAAAATCTGAGCCAAAAAGAAGTGGTTCTGCTGCTGAAGCAGAGATGAAAAATTGGGGCATACAGGAAGAGATTGAGGTGGCAAAGGTTGATAAGAATAAGATATGGGTTAAGATGATACTTGTGAACAAGAGAGGAAGGTTATTGAAATTAATTGAAGATTTGAATGATTCACGCATTGAAATGATTGACATTAGTGTTACAACTATAGAAGGAGCATATCTTGTTACAGCAACATTACAGGGATTAGATGGTGAACCACTTGAAGAATATCACATTCCAACTCTTATCAAGTTAGATTAG 630 0.3524 MEQGNDHRLYVSIEDLGFNGENCNNRGKLRKINHYDDDTHVYTSKNLETERKRREKLSSRLLMLRSLVPNITNMNKASIIEDAITYMQKLQNEVKSLTEELHDMGGTKEKKSEPKRSGSAAEAEMKNWGIQEEIEVAKVDKNKIWVKMILVNKRGRLLKLIEDLNDSRIEMIDISVTTIEGAYLVTATLQGLDGEPLEEYHIPTLIKLD* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2472 209 PANTHER TRANSCRIPTION FACTOR DYT1 12 203 - -
Psa7g2472 209 Coils Coil 80 107 - -
Psa7g2472 209 Pfam Helix-loop-helix DNA-binding domain 47 91 IPR011598 GO:0046983
Psa7g2472 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 103 IPR036638 GO:0046983
Psa7g2472 209 MobiDBLite consensus disorder prediction 102 123 - -
Psa7g2472 209 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 203 - -
Psa7g2472 209 Gene3D - 38 105 IPR036638 GO:0046983
Psa7g2472 209 SMART finulus 47 96 IPR011598 GO:0046983
Psa7g2472 209 MobiDBLite consensus disorder prediction 102 120 - -
Psa7g2472 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2472 Psa-Chr7 174659743 174661601 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2472 42 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 43.949 2.02e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g2472 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2472 - - mtr:MTR_4g091910 229.95