Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2470 ATGGCGACTCATCTCCCCGAACACTTCAAATGTCCGATTTCTCTTGAAATAATGTCTGACCCAGTCATCTTATCTTCCGGTCACACATTCGACCGTCCTTCAATCCAACGATGGCTAGACGATGGTCATAGGACTTGTCCAATTACGAAACTACCCCTCCCTGATAATCCTTCCCTTATTCCCAATCACGCTCTTCGAAGCTTAATCTCTACCTACACACTCTTACCACCGCTGCACCAAATCATGTCCCAACCGGAAACCCTAATCTCGTCTTTAACCGCTTCTTCTTCTTCCTCCGATTTCAAAATCGACTCGCTCCGGCAACTCGGTCGCCTTTCCAAGCGCGACGCTAACTTCCGCCGCCGTCTTGTTGATTCCGGTGCGGTCTTCGCCGTTCTCTTCTGCATCGACTCATCCTCCTCCTCCGGGGACTCTAAGCTTCAGGAGAAGGCTCTCTCTCTTCTTCTCAACCTTAGCCTCGACGACGACACTAAGATTGGACTTGTCGCCGAGGGTGCAATCTCCCGTGTCGTCGCTTTCCTCCTCCGTGCAGCCTCGGCTGACTGCCGTGCTTTAGCCGCAACAATAATCACGAGCCTTGCGGTTGTGGAGGTGAATAAAGCGACTATTGGGGCTTTCCCAGGGGCAATTGGAGCTCTGGTGGCGATTCTCCGGGATGGGAAGGGGAGAGAGAGGAAAGAGGCAGCTACCGCACTTTACGCGCTTTGCTGTTTTCGGGATAACCGGAAAAGGGCGGTGGATTGTGGCGCGGTGCCGATTCTGATGAGATGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAGGAAGGTAGGGAACAATTGGAGAGTTATAGTGGTTGTGTGCAGATTCTGGTTAGTGTTTTGAGGAATGGAAGCTCAAGAGGGATTCAGTATTCACTGTTGGCACTTACTTCACTATGTTTTTATAGCAAGGAAATGCTTTTGGTTACTCTGCAAGAAGGAGTTTTGGAAATCTGTCTTGGGTTGTTAGAGGATGATAATGAGAAAGTTAGGAGAAATTCCTCCAATTTGATTCGGGTTCTTCGCGGCAACAACCACCACTGGATCAGTTGA 1119 0.4942 MATHLPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDDGHRTCPITKLPLPDNPSLIPNHALRSLISTYTLLPPLHQIMSQPETLISSLTASSSSSDFKIDSLRQLGRLSKRDANFRRRLVDSGAVFAVLFCIDSSSSSGDSKLQEKALSLLLNLSLDDDTKIGLVAEGAISRVVAFLLRAASADCRALAATIITSLAVVEVNKATIGAFPGAIGALVAILRDGKGRERKEAATALYALCCFRDNRKRAVDCGAVPILMRCVECGLERGVEVIGVLAKCKEGREQLESYSGCVQILVSVLRNGSSRGIQYSLLALTSLCFYSKEMLLVTLQEGVLEICLGLLEDDNEKVRRNSSNLIRVLRGNNHHWIS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2470 372 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Psa7g2470 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Psa7g2470 372 PANTHER U BOX DOMAIN-CONTAINING 3 369 - -
Psa7g2470 372 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Psa7g2470 372 Gene3D - 85 371 IPR011989 -
Psa7g2470 372 SUPERFAMILY RING/U-box 4 73 - -
Psa7g2470 372 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Psa7g2470 372 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 369 - -
Psa7g2470 372 CDD RING-Ubox_PUB 9 50 IPR045210 -
Psa7g2470 372 SUPERFAMILY ARM repeat 66 363 IPR016024 -
Psa7g2470 372 Coils Coil 371 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2470 Psa-Chr7 174551109 174554643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2470 1 365 U-box Gene Family AT4G21350 58.289 3.67e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2470 - - gmx:100785141 514.612