Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2369 ATGGGGAGAGGAAAGATTGTGATTCGAAAGATTGAGAATTTGACTAACCGGCAAGTGACTTTCTCAAAACGAAGAAAAGGGTTGAAGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTGGTTTTGTTCTCTTCCACTCATAAGCTTTATCAATATGCAAGCTCCAGCATGGAATTAATTATCGATCGTTATAATAAGTGTACTAAGGATCACCATCGGGCAATAGATACTACTTTGGACGTCAAGTTTTGGCAAAGAGAAGTAGCAAGCTTGAGGCAACAATTGCATCACTTGAATGATAGCCAAAGGCAATTGATGGGCCAAGAACTATCTGGTTTGGATTTTACTGAGCTGCAGCATCTCGAGAGTCAATTGGAGATGAGTTTGAAAAGCATTCGCACGAGAAAGGGTCAAATTTTTAGCGATGAGATCAATGAATTACACAAAAAGGGAAGCCTTAGTAGTAAAGAAAATGAAGAACTTCACAAGAAGATAAACCGAATTGGTGAAGAAAATGCAGAACTAGAGAAGGTTATTGGAACAAGGCGCAGAGAATATACAATATCCAATGGTTCACAGAGTAGTATCAGATATGGATATGATATACATGATGAACAAATCAGTCTCCAGCTAAGGCAGCCACAACAACCACAACCATAA 675 0.3852 MGRGKIVIRKIENLTNRQVTFSKRRKGLKKKAKELSILCDAQVGLVLFSSTHKLYQYASSSMELIIDRYNKCTKDHHRAIDTTLDVKFWQREVASLRQQLHHLNDSQRQLMGQELSGLDFTELQHLESQLEMSLKSIRTRKGQIFSDEINELHKKGSLSSKENEELHKKINRIGEENAELEKVIGTRRREYTISNGSQSSIRYGYDIHDEQISLQLRQPQQPQP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2369 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa7g2369 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa7g2369 224 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Psa7g2369 224 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g2369 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g2369 224 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g2369 224 Coils Coil 163 183 - -
Psa7g2369 224 Coils Coil 86 106 - -
Psa7g2369 224 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Psa7g2369 224 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 221 - -
Psa7g2369 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Psa7g2369 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g2369 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g2369 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g2369 224 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Psa7g2369 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2369 Psa-Chr7 169074789 169099689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2369 1 221 MADS-box Gene Family AT2G22630 51.556 1.99e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa7g2369 K-box 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2369 K09264 - gmx:100779119 241.891