LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g2336	ATGGAAATAGCGAATTCACGTGAGGATGGGTTAATGCCACACTGTTCCAATGGAGCTTCGCTTTCTGATGAAGGTGAACAACCTCACCCCATTGTTACACGTGCCAGTGAACTCACCATTTCCTTTGAAGGCGAGGTCTATGTTTTCCCTTCCGTTACGCCACAAAAGGTGCAGGCTGTATTGTTACTCTTAGGAGGGCAGGAGACACCCAATAGCATCCCCACCGCTGACTTTTTGGTGCAGCAAAACTATCACGACATTTGGGGAATAAATGATCCTTCGCGTAATTCAAAGCTTTCGCGGAGATTTGAGTCACTTGTTAGGTTCCGTGAAAAACGAAAAGACAGATGTTTTGAGAAGAAAATTCGGTACACTTGCCGTAAAGAGGTTGCTCAGAGAATGCAACGGAAGAATGGACAGTTTTCATCATTGAAGGAAGAGTACAGTTCTCCGGCTGAAAACCAGGATTCTAACAATGGTACACCTTGCCCAAAATCTACTGAGCGTAGATGTCAGCATTGTGGAATTGGTGAGAAGTCTACTCCAGTAATGCGCCGAGGACCGGCTGGTCCAAGATCTCTATGCAATGCCTGTGGGCTGACGTGGGCAAATAAGGGAACGCTGAGAGATCTCAACAGAGCAGGAAGGATTGCTTTTGAACAGAATGAATTGGATACTTCAACTGACCTAAAGCCTTCAACAACAGAGCCAGAAAATTCATGTGCAGCGCAGGACAAGGAGGAAATAAAGGAAAGCCTCCGGGAAACAAAAACTCCTGAGATGATAGATGAGCAGTATATGCTCGAATCTGCTGAAGCAGTTATTGACAACTTGTCCATCCAAGTGGAGAACAATGCTCTTGATCTGCATGAGCAGGATAAGACAATGGAGGATCTTGCTGATGCTTCTGGGATCGAATTTGAGATTCCTGCCGGTTTTGATGATCAGGTTGATATTGATGATCCCAACCTGAGGACTTTCTGGCTGTGA	990	0.4556	MEIANSREDGLMPHCSNGASLSDEGEQPHPIVTRASELTISFEGEVYVFPSVTPQKVQAVLLLLGGQETPNSIPTADFLVQQNYHDIWGINDPSRNSKLSRRFESLVRFREKRKDRCFEKKIRYTCRKEVAQRMQRKNGQFSSLKEEYSSPAENQDSNNGTPCPKSTERRCQHCGIGEKSTPVMRRGPAGPRSLCNACGLTWANKGTLRDLNRAGRIAFEQNELDTSTDLKPSTTEPENSCAAQDKEEIKESLRETKTPEMIDEQYMLESAEAVIDNLSIQVENNALDLHEQDKTMEDLADASGIEFEIPAGFDDQVDIDDPNLRTFWL*	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g2336	329	MobiDBLite	consensus disorder prediction	137	166	-	-
	Psa7g2336	329	CDD	ZnF_GATA	170	212	IPR000679	GO:0006355\|GO:0043565
	Psa7g2336	329	MobiDBLite	consensus disorder prediction	223	240	-	-
	Psa7g2336	329	Gene3D	-	164	222	IPR013088	GO:0006355\|GO:0008270
	Psa7g2336	329	SMART	tify_2	31	66	IPR010399	-
	Psa7g2336	329	Pfam	GATA zinc finger	171	207	IPR000679	GO:0006355\|GO:0043565
	Psa7g2336	329	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	166	219	-	-
	Psa7g2336	329	Coils	Coil	127	147	-	-
	Psa7g2336	329	Pfam	CCT motif	102	142	IPR010402	GO:0005515
	Psa7g2336	329	Pfam	tify domain	35	65	IPR010399	-
	Psa7g2336	329	PANTHER	GATA TRANSCRIPTION FACTOR 28	25	320	IPR045280	GO:0006355
	Psa7g2336	329	SMART	GATA_3	165	218	IPR000679	GO:0006355\|GO:0043565
	Psa7g2336	329	MobiDBLite	consensus disorder prediction	137	170	-	-
	Psa7g2336	329	ProSiteProfiles	Tify domain profile.	31	66	IPR010399	-
	Psa7g2336	329	ProSitePatterns	GATA-type zinc finger domain.	171	198	IPR000679	GO:0006355\|GO:0043565
	Psa7g2336	329	PANTHER	GATA TRANSCRIPTION FACTOR 28 ISOFORM X1	25	320	-	-
	Psa7g2336	329	ProSiteProfiles	CCT domain profile.	102	144	IPR010402	GO:0005515
	Psa7g2336	329	ProSiteProfiles	GATA-type zinc finger domain profile.	165	222	IPR000679	GO:0006355\|GO:0043565
	Psa7g2336	329	MobiDBLite	consensus disorder prediction	223	243	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g2336	Psa-Chr7	166775673	166780076	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g2336	31	214	Tify Gene Family	AT1G51600	56.410	1.40e-62	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Psa7g2336		CCT	1.5e-13	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g2336	-		-	mtr:MTR_4g093730	489.574