Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2322 ATGACAAGAAAGAAGATACAGATCAAGAAAATTGACAACATCAGTTCAAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTTTCAACTCTATGTGATGCAGATGTAGCTCTTATGGTTTTTTCTGCAACTAATAAGCTTTTTGAGTATGCTAGTTCAAGTATGCAACAAGTAATTGAAAGACGCAATGGATGTTCAGAAAATCATAGATTAATGGACCATCCATCTGCGGATCAGTTTCAGGTTGAGAGTGAGTCCAGCGACACACTGCGCAAGAAATTAGAAGATAAATATCGTGAACTGAGACAAATGAATGGAGAAGATTTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGACTCTACTTAGAAGAAGTTTGTCCAGTGTCTCAAAAATGAAGGATGAAATGTTTATGCAAGGCATCAACACCCTTAAGAGAAAGAAAGTGGAACTGATCCAAGAAAATCAAAGATTGAAGAATGTGATAGGAGACCTGATAATTAGACAAAGGCAACAGTCATTGGAATCCGTTATTAGCCGTTCTTCTTATTTTCTTGAAGACGATGGCAGTGACACATCTCTTAAGTTGGGGTTAACATTACATAATTGA 636 0.3758 MTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADVALMVFSATNKLFEYASSSMQQVIERRNGCSENHRLMDHPSADQFQVESESSDTLRKKLEDKYRELRQMNGEDLQELTVQELQKLETLLRRSLSSVSKMKDEMFMQGINTLKRKKVELIQENQRLKNVIGDLIIRQRQQSLESVISRSSYFLEDDGSDTSLKLGLTLHN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2322 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g2322 211 Coils Coil 150 170 - -
Psa7g2322 211 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Psa7g2322 211 Coils Coil 94 118 - -
Psa7g2322 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g2322 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g2322 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g2322 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa7g2322 211 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g2322 211 Pfam K-box region 90 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g2322 211 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Psa7g2322 211 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Psa7g2322 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa7g2322 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 - -
Psa7g2322 211 PANTHER - 1 189 - -
Psa7g2322 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2322 Psa-Chr7 165849152 165855342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2322 1 208 MADS-box Gene Family AT4G24540 48.858 2.34e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa7g2322 K-box 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2322 - - aprc:113860188 278.1