Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2321 ATGACAAGAAAGAAGATACAGATCAAGAAAATCGATAACATCAGTTCAAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTTTCAACTCTCTGTGATGCAGATGTAGCTCTTATGGTTTTTTCTGCAACTAATAAGCTCTTTGAGTATGCTAGTTCCAGTATGCAACAAGTAATTGAAAGGCGTAATGGATGTTCTGAAAATCATAGATTAATGGACCGTCCATCTACGGATCAGTTTCAGGTTGAGAGTGAGTCCAGCGACACACTGCACAAGAAATTAGAAGATAAATCTCGTGAACTGAGACAAATGAATGGAGAAGATTTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGACTCTACTTAGAAGAAGTTTGTCCAGTGTCTCAAAAAAGAAGGATGAAATGTTTATTCAAGGCATCAACACCCTTAAGAGAAAGGAAGTGGAACTGATCCGAGAAAATCAAAGACTGAAGCATGTTGTACCAGACCTTATAATTGGACAAAGGCAACAATCATTGGAATCGGTTATTAGACGTTCATCTTATTTTCTTGAAGACGGTGGTGACAGTGACACTTCTCTCAAGTTAGGGTTACCATTTCATAATTAA 639 0.3834 MTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADVALMVFSATNKLFEYASSSMQQVIERRNGCSENHRLMDRPSTDQFQVESESSDTLHKKLEDKSRELRQMNGEDLQELTVQELQKLETLLRRSLSSVSKKKDEMFIQGINTLKRKEVELIRENQRLKHVVPDLIIGQRQQSLESVIRRSSYFLEDGGDSDTSLKLGLPFHN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2321 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g2321 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Psa7g2321 212 Coils Coil 150 170 - -
Psa7g2321 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g2321 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g2321 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g2321 212 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Psa7g2321 212 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Psa7g2321 212 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g2321 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa7g2321 212 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g2321 212 PANTHER - 1 207 - -
Psa7g2321 212 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Psa7g2321 212 Coils Coil 94 114 - -
Psa7g2321 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa7g2321 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2321 Psa-Chr7 165786158 165808936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2321 1 209 MADS-box Gene Family AT4G24540 50.000 3.91e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa7g2321 K-box 5.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2321 - - aprc:113860188 269.626