Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2297 ATGGAGAATTGTTGGAGAAGTGAAGGGATTGAAACCGCAGGTGACGACGGCGTACCCTTCTGTGACGGATACATGGAAAACGATGACGTTGATATGGTCGGCGCCGACAACAACGAAGCCGATTTGGATGACATGAAGAAACGGTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGCGAAAGAGATGGGATCCGTGCAAGATCCCGCTAATGCTTCTGCAAGTCAGGTTAATAGGGAGGAAGTTGATTCTCGATCAATCTTCGTGGGCAATGTGGACTATGCATGTACTCCCGAAGAAGTGCAGCAGCATTTCCAGTCGTGTGGAACAGTAAACAGAGTTACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTTTCCCTGAATGAATCTGAACTGCATGGACGGCAATTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAATTTCGTCCCCGCCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATGCACCTCCTTTTGCCTATGCCCCGGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCAGAATGGGGATGCGCTACAGCCCATACTATTGA 672 0.4821 MENCWRSEGIETAGDDGVPFCDGYMENDDVDMVGADNNEADLDDMKKRLKEMEDEAAALREMQAKVAKEMGSVQDPANASASQVNREEVDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKVPRFRMGMRYSPYY* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2297 223 CDD RRM_II_PABPs 93 164 - -
Psa7g2297 223 SMART rrm1_1 93 164 IPR000504 GO:0003723
Psa7g2297 223 Coils Coil 35 69 - -
Psa7g2297 223 SUPERFAMILY RNA-binding domain, RBD 80 192 IPR035979 GO:0003676
Psa7g2297 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 22 219 - -
Psa7g2297 223 PANTHER - 22 219 - -
Psa7g2297 223 Gene3D - 28 165 IPR012677 -
Psa7g2297 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Psa7g2297 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2297 Psa-Chr7 163250650 163257302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2297 93 163 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 2.03e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2297 K14396 - gmx:100784473 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2297 7 163250650 163257302 Psa7g2297 7 163250650 163257302 ECH