Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g2282 | ATGGCGGAGCGTGCTTCTCACGGACTGGCTCCTCGGCTAGATATTCAGCAGTTACAGTTTGAAGCCCAGCATCGGTGGTTACGTCCTGCAGAAATATTGGAAATTCTTAGTAATTTTAAGTTGTTTCAAATCACACCAGAACCGCCTAACAAGCCACCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAATTGGAGGAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTCAAGATTAACAAGACAAATATTGGCGCAAGTACAGATACTAACGGGGTTACATCAGATTCCCACAAGGGAAGCTCTGTGTCATCTGGATTTCATGCAAATTCTGTTAACATGCCTTCAGGAAGTGCAGATTCCATGAGCCCAACAAGCACATTAACTTCTTTATGTGAAGAAGCAGATTCAGAGGATACTCATCAAGCAAGTCCAAGATTTCACACCTTTGACGAGTCACAAAATCTTGGGAATGGTCCACTGATGGGTGATCATGGCCAGTTATCGATGTCAGGTCCAAATTACCTCCCACTTGTTCATGGGGGTAAATCCAATTCTAGTGATACTACATACATCGAGGGTCAGAGAGCACTCAACATAGCATCCTGGGACAATGGCATGGAGAAATCTGCAGGATTGTATACTAATCCTTCCCATGTATCGTCTAATTCTATTCCATCAAGTTCAATGAGCAACTTCCTTGAAGAAGAACAAGCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCGTTGACTTCGGAATTTGTATCTGATTATTCCGCTGAACTACTGGGAAAAGAAACTAACAATGCAAGTCCAGAAATTTGTTCGGATCCATTTTATTTTAATTGTGAACCAAAAGAGCAGCCTGTGCAGCAAAACATGTCAAATGAGCATGCACAATCTCAGGATGCACCGAAATCTGACTTTGAAACTCATGGTGAACCCAGTGTCAACTATTCCTTGAACATGAAGCATGCTTTTAAGGATGCAGAAGAAAGCCTGATTAAGGTTGATAGCTTCTCTAGGTGGATGTCTACAGCATTTGCATCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATTCCATGGGGCACAGATGAATGTGGGAATGTGATAGATGATACCTCGTTGAACCTTTCCCTATCTCAAGACCAGCTGTTTAGCATACATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTCAGGTGTTGATTATTGGGACATTTTTGAAGAGTAAACCAAATGTGGAAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCAGCTACTGTTTTAGCTAATGGAATTCTATGCTGTCAAGCTCCACCTCATGAGATTGGACGGATCCCTTTCTATGTAACCTTTTCCAATAGATTTGCTTGTAGTGAAGTTTGGGAATTTGAGTTCAGAGAGGGCTTCACTAGAAATGTAGATTTGGCAGATTTTTTTAACAGCTCTACTGAAATGATGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTCAGTGCATCTTACAGATCAAGTTTTTGAGGATGATATGGAGAAACGGAATTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAGTATTCGAGTAATGAAGAGCCAACTGGAGAGATGGATATATCAAAATACATGTTGAAGATGCATATGTTTCACAGGCAGGTTAAGGAAAAGTTGTTCTCATGGCTTCTTCACAAAGTAACTGAAACCGGTAAAGGACCTCATGTGATTGGTAAAGATGGGCAAGGTGTATTACATTTAGTTGCGGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAATTTCTGGAGTTAATATCAACTTCCGTGACGTGAATGGGCGGACTGCTCTACACTGGGCTGCATCATGTGGCAGGGAACGAACAGTTGCGCTCCTTGTCTCCATGGGTGCAGCTGCTGGAGCATTGACAGATCCATGTCCAGCATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTGTGGTCACAAAGGAATTTCGGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGCTGATGCAAATGAAGATGGTACAACAGAAAAGAAAGTCGTACAGACGATTTCAGAACGAATTGCGACACCTGTGCTCTGGGGAGATATACCAGATGTTATCTGCCTTAAGGATTCTCTTGATGCTGTCCGCAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAGCAGTTAGCTCAGTATGACGATGATGATCATGAGTTTGGATTGTCAGATCAGCAGGCTCTTTCTCTTGTAGCTTCTAAGGCTTGCAAATCTACTCATGGGAAAGGTTCAGCAAATGCTGCTGCAGTACAAATACAGAAAAAGTTCCGTGGCTGGACAAAGAGAAAAGAATTCTTGTTCATTCGTGAAAGAGTCGTTAAAATCCAGGCCCACGTAAGAGGTCACCAGGTAAGAAAGAAGTTTAAATCAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGTGGTTTACGTGGATTTCGACCAGATGCCGTAAAGAATGTCCCCAACCAACCAAACAAAGATATTGTGAAGGAGGATGATTATGATTTTTTCAAGGAAGGGAGGAAACAGAGTGAAGAAAGGTTCCAAAAGGCCCTTTCAAGGGTTCAGTCCATGGTTCAGTATCCAGAAGCTCGGGCTCAGTACAGACGACTGCTAAATGTAGTAGATGATTTCCGTCAAAAGCAGCCATGTAATTTGAGTTTGATGAATTCGGAAGAAGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGTTTTTAGATGATGATAATTTCTTACCTATAGCATTTGATTGA | 3174 | 0.4171 | MAERASHGLAPRLDIQQLQFEAQHRWLRPAEILEILSNFKLFQITPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKINKTNIGASTDTNGVTSDSHKGSSVSSGFHANSVNMPSGSADSMSPTSTLTSLCEEADSEDTHQASPRFHTFDESQNLGNGPLMGDHGQLSMSGPNYLPLVHGGKSNSSDTTYIEGQRALNIASWDNGMEKSAGLYTNPSHVSSNSIPSSSMSNFLEEEQAVFTEGRASQSLQSNWQIPFEDNTGEFPKWSFTQSLTSEFVSDYSAELLGKETNNASPEICSDPFYFNCEPKEQPVQQNMSNEHAQSQDAPKSDFETHGEPSVNYSLNMKHAFKDAEESLIKVDSFSRWMSTAFASVDDLHMQSSPGIPWGTDECGNVIDDTSLNLSLSQDQLFSIHDFSPKWAYAESEIQVLIIGTFLKSKPNVETCNWSCMFGEVEVPATVLANGILCCQAPPHEIGRIPFYVTFSNRFACSEVWEFEFREGFTRNVDLADFFNSSTEMMLHLQLEELLTLNSVHLTDQVFEDDMEKRNLILKLISLKEEEEYSSNEEPTGEMDISKYMLKMHMFHRQVKEKLFSWLLHKVTETGKGPHVIGKDGQGVLHLVAALGYDWAIAPIVISGVNINFRDVNGRTALHWAASCGRERTVALLVSMGAAAGALTDPCPAFPSGRTPADLASSCGHKGISGFLAESLLTSHLESLTVADANEDGTTEKKVVQTISERIATPVLWGDIPDVICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYDDDDHEFGLSDQQALSLVASKACKSTHGKGSANAAAVQIQKKFRGWTKRKEFLFIRERVVKIQAHVRGHQVRKKFKSIIWSVGILEKVVLRWRRKGSGLRGFRPDAVKNVPNQPNKDIVKEDDYDFFKEGRKQSEERFQKALSRVQSMVQYPEARAQYRRLLNVVDDFRQKQPCNLSLMNSEEAVDGVEDLIDIDMFLDDDNFLPIAFD* | 1058 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g2282 | 1057 | MobiDBLite | consensus disorder prediction | 371 | 395 | - | - | |
| Psa7g2282 | 1057 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 1 | 1057 | - | - | |
| Psa7g2282 | 1057 | ProSiteProfiles | Ankyrin repeat region circular profile. | 705 | 730 | - | - | |
| Psa7g2282 | 1057 | ProSiteProfiles | IQ motif profile. | 880 | 909 | IPR000048 | GO:0005515 | |
| Psa7g2282 | 1057 | ProSiteProfiles | IQ motif profile. | 903 | 927 | IPR000048 | GO:0005515 | |
| Psa7g2282 | 1057 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 | 1 | 1057 | - | - | |
| Psa7g2282 | 1057 | SMART | CG_1_2 | 18 | 136 | IPR005559 | GO:0003677 | |
| Psa7g2282 | 1057 | Pfam | IPT/TIG domain | 472 | 545 | IPR002909 | - | |
| Psa7g2282 | 1057 | Pfam | Ankyrin repeats (3 copies) | 677 | 766 | IPR002110 | GO:0005515 | |
| Psa7g2282 | 1057 | SUPERFAMILY | Ankyrin repeat | 658 | 765 | IPR036770 | - | |
| Psa7g2282 | 1057 | Gene3D | Immunoglobulins | 465 | 560 | IPR013783 | - | |
| Psa7g2282 | 1057 | Pfam | CG-1 domain | 21 | 134 | IPR005559 | GO:0003677 | |
| Psa7g2282 | 1057 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 15 | 141 | IPR005559 | GO:0003677 | |
| Psa7g2282 | 1057 | SMART | ANK_2a | 705 | 734 | IPR002110 | GO:0005515 | |
| Psa7g2282 | 1057 | SMART | ANK_2a | 744 | 773 | IPR002110 | GO:0005515 | |
| Psa7g2282 | 1057 | SMART | iq_5 | 902 | 924 | IPR000048 | GO:0005515 | |
| Psa7g2282 | 1057 | SMART | iq_5 | 879 | 901 | IPR000048 | GO:0005515 | |
| Psa7g2282 | 1057 | SUPERFAMILY | E set domains | 472 | 558 | IPR014756 | - | |
| Psa7g2282 | 1057 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 881 | 930 | IPR027417 | - | |
| Psa7g2282 | 1057 | ProSiteProfiles | Ankyrin repeat profile. | 705 | 737 | IPR002110 | GO:0005515 | |
| Psa7g2282 | 1057 | Gene3D | - | 577 | 787 | IPR036770 | - | |
| Psa7g2282 | 1057 | Pfam | IQ calmodulin-binding motif | 882 | 900 | IPR000048 | GO:0005515 | |
| Psa7g2282 | 1057 | Pfam | IQ calmodulin-binding motif | 906 | 924 | IPR000048 | GO:0005515 | |
| Psa7g2282 | 1057 | Gene3D | - | 880 | 927 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g2282 | Psa-Chr7 | 162497589 | 162505810 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g2282 | 1 | 1038 | CAMTA Transcription Factor Family | AT5G64220 | 51.226 | 0.0 | 1001 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | CAMTA | Psa7g2282 | CG-1 | 3.7e-51 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g2282 | K21596 | - | gmx:100795682 | 1543.48 |