Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2258 ATGTCTCACTTCGGAAGGTCAGGCCCTCCAGACATCTCCGACACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGTACCACCGCCGACGACCTATTTCCGTTGTTCGATAAGTACGGCAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGAACTGGTGAGTCGAGGGGTTTCGCTTTTGTGCGTTATAAGTATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACAGTTCAGTTTGCAAAATATGGACCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCTCCGAGATCAAAGACCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCGTGATGATTACAAAGACAAGGATTATAGGAGGAGAAGTCGCAGCAGGAGTTATGACAGGCATGAACGTGACAGGTATCGTGGGAGAGACAGGGACAGTCGTCGCCGAAGCAGAAGCCGTAGTGCTAGTCCTGGTTACAAGGGCCGTGGGAGGGGGCGCTATGATGACGAGCGTCGTAGTAGAAGCCGGAGCAGATCTGTGGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTAGAAAGAGCCCTTCTCCTAAAAGGAGTATTTCCCCTCAAAAGAGTGCTTCCCCCAGGAGAAGTCCACGCCGTGTAAGTCCTGATAATCGTAGCCGTGATGGAAGGTCTCTTACGCCTCACAGTGTCTCACCACGAGGCCGCCCTGATGCTTCCCGAAGCCCATCTCCTCGAAATTCAAATGGTGATGAATAA 807 0.5155 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKTSRSRSPSRRRHRDDYKDKDYRRRSRSRSYDRHERDRYRGRDRDSRRRSRSRSASPGYKGRGRGRYDDERRSRSRSRSVDSRSPARRSPSPRKSPSPKRSISPQKSASPRRSPRRVSPDNRSRDGRSLTPHSVSPRGRPDASRSPSPRNSNGDE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2258 268 MobiDBLite consensus disorder prediction 122 165 - -
Psa7g2258 268 MobiDBLite consensus disorder prediction 226 240 - -
Psa7g2258 268 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Psa7g2258 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Psa7g2258 268 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Psa7g2258 268 MobiDBLite consensus disorder prediction 197 225 - -
Psa7g2258 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
Psa7g2258 268 Gene3D - 4 105 IPR012677 -
Psa7g2258 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Psa7g2258 268 MobiDBLite consensus disorder prediction 175 196 - -
Psa7g2258 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Psa7g2258 268 MobiDBLite consensus disorder prediction 100 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2258 Psa-Chr7 161135019 161137697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2258 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 3.39e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2258 K12891 - gmx:100778928 284.648