Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2253 ATGGACGCTTCATCTTTAACCAGATCAAGTCTAAGCATTTCAAATTCAAAGCCATTTCATTACGTTCCACAACAAAGACCATGTCACGTGCACTTTGCAATTTCATGCAGAGTAAAGAAAATGGAGGAAACAAGGAATGGATCAAATTTCTACAAAATGTTATCTGTGAATCCAAAAAGTGCAACAATGGAAGAGATAAAGAGAGCTTATAGATCAATGGCACTTCAATATCACCCTGACGTGTGTCATGATCCTTCCATGAAAGAGGAATCAACTAGAATGTTTGTTCGGTTAAATGCGGCTTATGAAACTTTGTCGAATCCTATGCTTCGTGAACAATATGATAGTGAGTTGGGATTGAAAAATATTATGATGAATAATGATGTTGTTGGTGAAGAGATTTGGAGAAGTAGGTGGCAAGAACAAGTGGTTGAGTTGAAGAAAAGGTCCTGTAGACGTATGGCACAAAAAGGAAGGTCTTGGGGTAGCAGAATGAGGACACAAAACATGAAAGATAGGAATTAA 525 0.3752 MDASSLTRSSLSISNSKPFHYVPQQRPCHVHFAISCRVKKMEETRNGSNFYKMLSVNPKSATMEEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVRLNAAYETLSNPMLREQYDSELGLKNIMMNNDVVGEEIWRSRWQEQVVELKKRSCRRMAQKGRSWGSRMRTQNMKDRN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2253 174 MobiDBLite consensus disorder prediction 155 174 - -
Psa7g2253 174 CDD DnaJ 49 107 IPR001623 -
Psa7g2253 174 PRINTS DnaJ domain signature 52 70 IPR001623 -
Psa7g2253 174 PRINTS DnaJ domain signature 70 85 IPR001623 -
Psa7g2253 174 PRINTS DnaJ domain signature 90 110 IPR001623 -
Psa7g2253 174 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 10 173 - -
Psa7g2253 174 ProSitePatterns Nt-dnaJ domain signature. 95 114 IPR018253 -
Psa7g2253 174 ProSiteProfiles dnaJ domain profile. 49 118 IPR001623 -
Psa7g2253 174 Pfam DnaJ domain 49 115 IPR001623 -
Psa7g2253 174 SUPERFAMILY Chaperone J-domain 41 114 IPR036869 -
Psa7g2253 174 SMART dnaj_3 48 110 IPR001623 -
Psa7g2253 174 Gene3D DnaJ domain 36 139 IPR036869 -
Psa7g2253 174 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2253 Psa-Chr7 160966625 160967555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2253 51 116 C2H2 Transcription Factor Family AT1G74250 41.176 9.91e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2253 7 160966625 160967555 Psa1g4980 1 366785938 366786494 PCT