LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g2213	TGAATTTGGAAAAGCTTTAACTCAGTTTAAAATGTCAGACGAAGATGAGTACCGTTGTTTTGTTGGTGGCCTTGCATGGTCAACATCGGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACAGAGGCTAAGGTGGTTGTTGACAAATTCTCTGGACGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATTCTATGAATGGGATAGATTTAGATGGCCGGACTATTACGGTCGACAAAGCTCAACCTCATCAAGGATCAGCTAGAGATGCTAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGTGGTGATCGTGACCGTGACCGAGGTGGTCGAGGATCCAGTGATGGAGGATGCTTTAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGGAAGTATGGTGGTGGCAGAGAAAGTCGATACGGTGGAAGCGGTGGTGGTGGCCACTATGGTCCTGATAGAAACGGAGATCGTTATTCTGGAGGTCGTAGCAGGGATGCTGGTAGTCGTGGAGATTCTGGAAATGATCGTTACTCCCGTGATCGTGATCGTGATCGTGCTGGACCATATGAACGACGGGGATCTGGAGGCTTTCGTTGA	673	0.4666	EFGKALTQFKMSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDSMNGIDLDGRTITVDKAQPHQGSARDARDDGDRYRERGRDRGDRDRDRGGRGSSDGGCFNCGKPGHFARECPSEGGRGGKYGGGRESRYGGSGGGGHYGPDRNGDRYSGGRSRDAGSRGDSGNDRYSRDRDRDRAGPYERRGSGGFR*	224

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g2213	223	SMART	c2hcfinal6	133	149	IPR001878	GO:0003676\|GO:0008270
	Psa7g2213	223	Gene3D	-	4	129	IPR012677	-
	Psa7g2213	223	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	17	95	IPR000504	GO:0003723
	Psa7g2213	223	SUPERFAMILY	RNA-binding domain, RBD	9	125	IPR035979	GO:0003676
	Psa7g2213	223	Gene3D	-	130	194	-	-
	Psa7g2213	223	SMART	rrm1_1	18	91	IPR000504	GO:0003723
	Psa7g2213	223	MobiDBLite	consensus disorder prediction	180	216	-	-
	Psa7g2213	223	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	20	89	IPR000504	GO:0003723
	Psa7g2213	223	PANTHER	TRANSFORMER-2-RELATED	11	182	-	-
	Psa7g2213	223	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	11	182	-	-
	Psa7g2213	223	Pfam	Zinc knuckle	133	149	IPR001878	GO:0003676\|GO:0008270
	Psa7g2213	223	ProSiteProfiles	Zinc finger CCHC-type profile.	134	149	IPR001878	GO:0003676\|GO:0008270
	Psa7g2213	223	SUPERFAMILY	Retrovirus zinc finger-like domains	116	154	IPR036875	GO:0003676\|GO:0008270
	Psa7g2213	223	MobiDBLite	consensus disorder prediction	97	128	-	-
	Psa7g2213	223	MobiDBLite	consensus disorder prediction	86	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g2213	Psa-Chr7	158894815	158896120	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g2213	19	94	Eukaryotic Initiation Factors Gene Family	AT1G22760	39.474	4.15e-08	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g2213	-		-	pvy:116124756	221.09