Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa7g2213 | TGAATTTGGAAAAGCTTTAACTCAGTTTAAAATGTCAGACGAAGATGAGTACCGTTGTTTTGTTGGTGGCCTTGCATGGTCAACATCGGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACAGAGGCTAAGGTGGTTGTTGACAAATTCTCTGGACGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATTCTATGAATGGGATAGATTTAGATGGCCGGACTATTACGGTCGACAAAGCTCAACCTCATCAAGGATCAGCTAGAGATGCTAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGTGGTGATCGTGACCGTGACCGAGGTGGTCGAGGATCCAGTGATGGAGGATGCTTTAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGGAAGTATGGTGGTGGCAGAGAAAGTCGATACGGTGGAAGCGGTGGTGGTGGCCACTATGGTCCTGATAGAAACGGAGATCGTTATTCTGGAGGTCGTAGCAGGGATGCTGGTAGTCGTGGAGATTCTGGAAATGATCGTTACTCCCGTGATCGTGATCGTGATCGTGCTGGACCATATGAACGACGGGGATCTGGAGGCTTTCGTTGA | 673 | 0.4666 | EFGKALTQFKMSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDSMNGIDLDGRTITVDKAQPHQGSARDARDDGDRYRERGRDRGDRDRDRGGRGSSDGGCFNCGKPGHFARECPSEGGRGGKYGGGRESRYGGSGGGGHYGPDRNGDRYSGGRSRDAGSRGDSGNDRYSRDRDRDRAGPYERRGSGGFR* | 224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa7g2213 | 223 | SMART | c2hcfinal6 | 133 | 149 | IPR001878 | GO:0003676|GO:0008270 | |
Psa7g2213 | 223 | Gene3D | - | 4 | 129 | IPR012677 | - | |
Psa7g2213 | 223 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 17 | 95 | IPR000504 | GO:0003723 | |
Psa7g2213 | 223 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 125 | IPR035979 | GO:0003676 | |
Psa7g2213 | 223 | Gene3D | - | 130 | 194 | - | - | |
Psa7g2213 | 223 | SMART | rrm1_1 | 18 | 91 | IPR000504 | GO:0003723 | |
Psa7g2213 | 223 | MobiDBLite | consensus disorder prediction | 180 | 216 | - | - | |
Psa7g2213 | 223 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 89 | IPR000504 | GO:0003723 | |
Psa7g2213 | 223 | PANTHER | TRANSFORMER-2-RELATED | 11 | 182 | - | - | |
Psa7g2213 | 223 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 11 | 182 | - | - | |
Psa7g2213 | 223 | Pfam | Zinc knuckle | 133 | 149 | IPR001878 | GO:0003676|GO:0008270 | |
Psa7g2213 | 223 | ProSiteProfiles | Zinc finger CCHC-type profile. | 134 | 149 | IPR001878 | GO:0003676|GO:0008270 | |
Psa7g2213 | 223 | SUPERFAMILY | Retrovirus zinc finger-like domains | 116 | 154 | IPR036875 | GO:0003676|GO:0008270 | |
Psa7g2213 | 223 | MobiDBLite | consensus disorder prediction | 97 | 128 | - | - | |
Psa7g2213 | 223 | MobiDBLite | consensus disorder prediction | 86 | 223 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa7g2213 | Psa-Chr7 | 158894815 | 158896120 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa7g2213 | 19 | 94 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 39.474 | 4.15e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa7g2213 | - | - | pvy:116124756 | 221.09 |