Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2213 TGAATTTGGAAAAGCTTTAACTCAGTTTAAAATGTCAGACGAAGATGAGTACCGTTGTTTTGTTGGTGGCCTTGCATGGTCAACATCGGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACAGAGGCTAAGGTGGTTGTTGACAAATTCTCTGGACGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATTCTATGAATGGGATAGATTTAGATGGCCGGACTATTACGGTCGACAAAGCTCAACCTCATCAAGGATCAGCTAGAGATGCTAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGTGGTGATCGTGACCGTGACCGAGGTGGTCGAGGATCCAGTGATGGAGGATGCTTTAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGGAAGTATGGTGGTGGCAGAGAAAGTCGATACGGTGGAAGCGGTGGTGGTGGCCACTATGGTCCTGATAGAAACGGAGATCGTTATTCTGGAGGTCGTAGCAGGGATGCTGGTAGTCGTGGAGATTCTGGAAATGATCGTTACTCCCGTGATCGTGATCGTGATCGTGCTGGACCATATGAACGACGGGGATCTGGAGGCTTTCGTTGA 673 0.4666 EFGKALTQFKMSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDSMNGIDLDGRTITVDKAQPHQGSARDARDDGDRYRERGRDRGDRDRDRGGRGSSDGGCFNCGKPGHFARECPSEGGRGGKYGGGRESRYGGSGGGGHYGPDRNGDRYSGGRSRDAGSRGDSGNDRYSRDRDRDRAGPYERRGSGGFR* 224
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2213 223 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Psa7g2213 223 Gene3D - 4 129 IPR012677 -
Psa7g2213 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Psa7g2213 223 SUPERFAMILY RNA-binding domain, RBD 9 125 IPR035979 GO:0003676
Psa7g2213 223 Gene3D - 130 194 - -
Psa7g2213 223 SMART rrm1_1 18 91 IPR000504 GO:0003723
Psa7g2213 223 MobiDBLite consensus disorder prediction 180 216 - -
Psa7g2213 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Psa7g2213 223 PANTHER TRANSFORMER-2-RELATED 11 182 - -
Psa7g2213 223 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 11 182 - -
Psa7g2213 223 Pfam Zinc knuckle 133 149 IPR001878 GO:0003676|GO:0008270
Psa7g2213 223 ProSiteProfiles Zinc finger CCHC-type profile. 134 149 IPR001878 GO:0003676|GO:0008270
Psa7g2213 223 SUPERFAMILY Retrovirus zinc finger-like domains 116 154 IPR036875 GO:0003676|GO:0008270
Psa7g2213 223 MobiDBLite consensus disorder prediction 97 128 - -
Psa7g2213 223 MobiDBLite consensus disorder prediction 86 223 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa7g2213 Psa-Chr7 158894815 158896120 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2213 19 94 Eukaryotic Initiation Factors Gene Family AT1G22760 39.474 4.15e-08 51.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2213 - - pvy:116124756 221.09