Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2154 ATGGTGACATTCTCCGTCGGTGGATGCGACGACGGTGAAGGACCTAGCAACCCGAACCAGAAGCGCCGAAGGGTAGACGACGGAGAAGAAACAGCTTCTACAAGAGAAGAAGAAAATCAACAACCCCAAGAAGGTTTCGAAATGGAAAATCCCCCAATTGGAACCCTAGAAAACGACACAAACGAAAGAACATCTGGATCCAACGTAGATCAAACTAAGGAATTGGGTAAGAACGTATCTGCCATCATTTCCGACCCTGATGTTCTCGATTGCTTCATTTGCTCTGAACCATTGACAATTCCTATATTCCAGTGTGAGAATGGGCATATTGCTTGCTCTAAATGTTGTGGGGAACTTAGGAACAAATGTCCCATGTGCTTAATGCCCATTGGGTACAATCGTTGCCGTGCTGTGGAGAAGTTGTTGGAATCGATTAAAATATCATGCCCGAATGCAAAATATGGCTGCAAAGATATGTTTAGTTGCAATTTGAAAACTAGCCACGAGAAGGAATGTGTATACATACCATGTAAGTGTCCACATACAGGTTGCGACTTTCTTGCATCATCGAAAGAGTTAGCTCTCCACTTCAGCCATAGACATGTAGGCTTTGGAATACAGTTTTCGTACGACAAATTTATATCTGTCTCGTTAAATACTCGCCAGAAAGAAATTGTTCTTCTAGATCAAAATGATGCAAGACTATTTATCGTTCACAATAACCTTGTTGATCTGGGAAATATGGTCCATGTTAGTTGCCTTGGCCCGAAATCGGTAAAAGATATTCATTATGATGTGTTGGCTAGGTCTCAGGGGAGCACATTAATATTGCAATCTTCTATGAAGACTATTCAAGACAATAATGGCTGTGTTCCTACAACTAACTTTCTTTTGATTCCATCAGATCATTTTGGTTTTGGACAACTCAAATTGGATATTCGTATAAAGTCTCAACTAAACCATAGCTGA 969 0.4076 MVTFSVGGCDDGEGPSNPNQKRRRVDDGEETASTREEENQQPQEGFEMENPPIGTLENDTNERTSGSNVDQTKELGKNVSAIISDPDVLDCFICSEPLTIPIFQCENGHIACSKCCGELRNKCPMCLMPIGYNRCRAVEKLLESIKISCPNAKYGCKDMFSCNLKTSHEKECVYIPCKCPHTGCDFLASSKELALHFSHRHVGFGIQFSYDKFISVSLNTRQKEIVLLDQNDARLFIVHNNLVDLGNMVHVSCLGPKSVKDIHYDVLARSQGSTLILQSSMKTIQDNNGCVPTTNFLLIPSDHFGFGQLKLDIRIKSQLNHS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2154 322 MobiDBLite consensus disorder prediction 16 42 - -
Psa7g2154 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 197 IPR013083 -
Psa7g2154 322 SUPERFAMILY TRAF domain-like 144 315 - -
Psa7g2154 322 MobiDBLite consensus disorder prediction 1 52 - -
Psa7g2154 322 Pfam Seven in absentia protein family 134 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa7g2154 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 317 IPR044286 -
Psa7g2154 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 317 - -
Psa7g2154 322 ProSiteProfiles Zinc finger SIAH-type profile. 144 202 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2154 Psa-Chr7 155446094 155448542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2154 87 319 C3H Transcription Factor Family AT2G41980 26.000 3.22e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2154 K04506 - gmx:100778869 395.201