Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2124 ATGACTCTGTCACCAACAAAGAAACTCACTCACCGTATCAACCTTACCAAAGAAAACACTCCGAACCATCCATTTCCCAAAATAGTCAGAATAACATACACAGACAAAGACGCTACAGACTCCTCCAGCGACGAAGAAGAAACTTCAAAACCTAACCGAACTAAAAAGTTTGTTAACGAGATTACCATAGAGCCATGCCTGAGCGAGAAAAACGGCTGTGGCCGCGGCAGCGGAGGCGGAGACGATGTTTCGAGGAAGAGGAAGAGGAACAGAACTAGCACCGGTGGAAAAACAAGAGCTCCGCCGACTCGTCGAGTCACCTCCGGGCAGAAATACAGAGGAGTTAGGCAGAGGCCATGGGGAAAATGGGCCGCAGAGATAAGAGACCCGTCGCGTGGTGTGCGCGTGTGGCTTGGCACGTTTCAAACTGCTGAAGAAGCTGCTATTGTGTACAACAACGCGGCTATTAAGCTGCGTGGTCCTGACGCGCTAACTAATTTTATAACACCACCTGCTTCGTGTGAAGTAGTATCTCCCGAAATTGAAAATCCTCCTCAGTTCCCGTACAAATGTCCCATGTGCTTAATGCCCATTGGGTACAATCGTTGCTGTGCTGTGGAGAAGTTGTTGGAATCGATTAAAATATCATGCCCGAATGCAAAATATGGCTGCAAAGATATGTTTAGTTGCAACTTGAAAACTAGCCACGAGAAGGAATGTGTAAATACTCGCCAGAAAGAAATTGTTCTTCTAGATCAAAATGATTCAAGACTATTTATCGTTCACAATAACCTTGTTGATCTGGGAAATATGGTCCATGTTAGTTGCCTTGGCCCGAAATTGGATTTTACCAATGTCTCAATGGAAGACACAACAGAATTTGACAACTCTCAAGAAAGATGCTGA 906 0.4525 MTLSPTKKLTHRINLTKENTPNHPFPKIVRITYTDKDATDSSSDEEETSKPNRTKKFVNEITIEPCLSEKNGCGRGSGGGDDVSRKRKRNRTSTGGKTRAPPTRRVTSGQKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFQTAEEAAIVYNNAAIKLRGPDALTNFITPPASCEVVSPEIENPPQFPYKCPMCLMPIGYNRCCAVEKLLESIKISCPNAKYGCKDMFSCNLKTSHEKECVNTRQKEIVLLDQNDSRLFIVHNNLVDLGNMVHVSCLGPKLDFTNVSMEDTTEFDNSQERC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2124 301 MobiDBLite consensus disorder prediction 1 57 - -
Psa7g2124 301 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Psa7g2124 301 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Psa7g2124 301 MobiDBLite consensus disorder prediction 69 115 - -
Psa7g2124 301 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Psa7g2124 301 SUPERFAMILY TRAF domain-like 212 242 - -
Psa7g2124 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 246 IPR013083 -
Psa7g2124 301 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Psa7g2124 301 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Psa7g2124 301 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Psa7g2124 301 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Psa7g2124 301 CDD AP2 110 167 IPR001471 GO:0003700|GO:0006355
Psa7g2124 301 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 8 173 - -
Psa7g2124 301 MobiDBLite consensus disorder prediction 1 21 - -
Psa7g2124 301 MobiDBLite consensus disorder prediction 33 54 - -
Psa7g2124 301 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2124 Psa-Chr7 154556961 154560003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2124 27 171 AP2-EREBP Transcription Factor Family AT4G27950 56.376 5.74e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa7g2124 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2124 - - mtr:MTR_5g009620 225.328