Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2083 ATGGGTTCTAAAAAAATAGAAATAAAATTGGTGAAGAACAAAGAAGCTAGGAATATCACATTTTCTAAAAGAAGGAAAGGTCTTTATAAGAAAGCAAGTGATTTATTCGTTCTTTGTGGTGCTAGAGTTGGATTGCTTGGATTCAGTCCTGGTGGTAAGCCCTTTGCTTTTGGTTCTCCATCTTTTCAAGTTGTGATTGATAAGTACCTTTATGAAGGAGGCAACGAGCCTTTTGAAAATGGAGAGATCGACAACCTCAACCAAGAACACGGGGCTTTGAAGAAAGAGATACATGTGGAGGGAAAAAAGATGGAAGAAATTGAAAAAGGTAAAGTCCATATTATCCCTATTAATCTTAGGTTGGAGTAA 369 0.3659 MGSKKIEIKLVKNKEARNITFSKRRKGLYKKASDLFVLCGARVGLLGFSPGGKPFAFGSPSFQVVIDKYLYEGGNEPFENGEIDNLNQEHGALKKEIHVEGKKMEEIEKGKVHIIPINLRLE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2083 122 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g2083 122 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g2083 122 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g2083 122 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Psa7g2083 122 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g2083 122 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Psa7g2083 122 PANTHER MADS BOX PROTEIN 3 110 - -
Psa7g2083 122 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa7g2083 122 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 3 110 - -
Psa7g2083 122 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2083 Psa-Chr7 152193389 152194213 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2083 1 72 Type I MADS-box Gene Family AT2G34440 48.611 3.88e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa7g2083 SRF-TF 7.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2083 - - mtr:MTR_4g094638 117.857