Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2082 ATGGGTCGTAAAAAAATAAAAATAAAATTGGTGAAGAACAAAGAAGCTAGGAATGTCACATTTTCTAAAAGAAGGAAAGGTCTCTGTAAGAAAGCAAGTGATTTATCCGTTCTTTGTGGTGCTAAAGTTGGATTGCTTGGATTCAGTCCTGGTGGTAATCCCTTTGCTTTTGGTTCTCCATCTTTTCAAGTTGTAATTGATGAGTACCTTCATGAAGGAGGCACTAAGCCTTTTGAAAATGGAGAGATCGAAAACCTCAACCAACAACACAAGGCTTTGAAGAAAGAGATACATGTGGAGAAAAAAAAGATGGAAGAAATTGAAAAAGGTAAAGTCCATATTGTCCCTACTAACCTTAGTTTGGAGGAACTTCAAAAAGTGAAGACTTCATTGAAGGAGCTCCGATGTGAAATTGAGGCAGCTTCATCTTTGCTTCTCCTTGCAAAGAAACCCGTGTTCATTGTTCAAGATCAAATAGATTGCAATATATAA 492 0.3679 MGRKKIKIKLVKNKEARNVTFSKRRKGLCKKASDLSVLCGAKVGLLGFSPGGNPFAFGSPSFQVVIDEYLHEGGTKPFENGEIENLNQQHKALKKEIHVEKKKMEEIEKGKVHIVPTNLSLEELQKVKTSLKELRCEIEAASSLLLLAKKPVFIVQDQIDCNI* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2082 163 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Psa7g2082 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Psa7g2082 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa7g2082 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa7g2082 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa7g2082 163 Coils Coil 124 144 - -
Psa7g2082 163 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Psa7g2082 163 PANTHER MADS BOX PROTEIN 2 157 - -
Psa7g2082 163 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 157 - -
Psa7g2082 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa7g2082 163 Coils Coil 76 110 - -
Psa7g2082 163 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2082 Psa-Chr7 152181138 152182033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2082 1 150 Type I MADS-box Gene Family AT2G34440 34.091 8.38e-27 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa7g2082 SRF-TF 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2082 - - mtr:MTR_4g094638 147.517