Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2081 ATGGAATCAAAGAAAAAAACAAGAGGAAAACAAAAGTTAGTGATGAGGAAGATTGAAGATATAGACAATCTCTTTGTAACATTTACAAAAAGAAAAACAGGTATTTACAACAAGGCCACAGAATTATCAACACTTTGTGGGGCTAAGGTTGATATTCTTATGATTTCTCCAACTGGAAATCCATTTTGTTATGGAGAACCTTCTTCCAAATCTTTGGTAAGAACAAGTTTAAAGGAAGAAACTTCATCAATGGAAGATCTAATAAAAAGACAAATGGTTGAAAAACTTAATATGAAAAACGATCAATTGATGGACGAAATCCATGTAGCAAAAGCTCAACGGGAAACATTGACTGCGTCAAATAGTTCTGGTTGGTGGGAGATAAAAGAGAAAGGTAGATATGATCATAAAATTGATGAACATATAAAGAATATCACACATCAAATGATAAATGAAGTAATAAGTCAGGGAGGAGAGATTGATTCTCATGCAAATTATTTCTTAGATAAATGGAATGGATTCGGTTCAGATCCTACCTGTCGCTTTGGGAGCAACAACAATGGTTCTGAAATTGAAGCAGGTGAAAGATCAAACCATTATGATCCAAAAAATAAAGGTAAGTCTATTATGTTTGGTGGCGCAAGCGGAAGTGGAACTGAGAGTTAG 666 0.3408 MESKKKTRGKQKLVMRKIEDIDNLFVTFTKRKTGIYNKATELSTLCGAKVDILMISPTGNPFCYGEPSSKSLVRTSLKEETSSMEDLIKRQMVEKLNMKNDQLMDEIHVAKAQRETLTASNSSGWWEIKEKGRYDHKIDEHIKNITHQMINEVISQGGEIDSHANYFLDKWNGFGSDPTCRFGSNNNGSEIEAGERSNHYDPKNKGKSIMFGGASGSGTES* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2081 221 Gene3D - 22 102 IPR036879 GO:0003677|GO:0046983
Psa7g2081 221 SUPERFAMILY SRF-like 9 75 IPR036879 GO:0003677|GO:0046983
Psa7g2081 221 PANTHER MADS BOX PROTEIN 10 111 - -
Psa7g2081 221 PANTHER AGAMOUS-LIKE 57 10 111 - -
Psa7g2081 221 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa7g2081 221 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa7g2081 221 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa7g2081 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa7g2081 221 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa7g2081 221 Coils Coil 93 120 - -
Psa7g2081 221 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa7g2081 221 MobiDBLite consensus disorder prediction 188 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2081 Psa-Chr7 152129432 152130418 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2081 9 167 Type I MADS-box Gene Family AT2G34440 27.168 1.43e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa7g2081 SRF-TF 9.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2081 - K12412 ccaj:109813207 113.62