Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2012 ATGTGTCACCCTCTCCTATGTTTCACTCATTCTCATTATTTTTCCATCTCCATGGCTGAAAACCACACTCGTACTCATTCTCACTCTCAATCTCCTATACCATGTCATGATCATGAACAAGCAGCTGGTTTTGATTGGATGGTTCTCGTGGCAGCTATTTTATGTGCTTTTGTTTGTGCTCTTGGTCTTAATACTATGTTACAATGTGTTTTTCAATGTATTGGTCGTGTACTTACCGAGCCTATACAATGGATTGCTTCTAGGAGGTTGAATTCTGGAATCAAGAAAAAAGATATGGTAGCTTTGCCAACTTCAACATATAGTAGTACTCATGACTCAGGTTCTCCATCTTCAGCTTCTAGTTGTGTGATTTGTTTAGCTGAATTCTGTAATGGAGACCAAATAAGGTTCCTTCCAAAATGCAATCATCATTTCCATGTGGTTTGTATTGATAAGTGGTTGCTGTCTCATTCTTCATGCCCTACTTGCAGGAATCTCACTCGAGTCTAG 510 0.3922 MCHPLLCFTHSHYFSISMAENHTRTHSHSQSPIPCHDHEQAAGFDWMVLVAAILCAFVCALGLNTMLQCVFQCIGRVLTEPIQWIASRRLNSGIKKKDMVALPTSTYSSTHDSGSPSSASSCVICLAEFCNGDQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRNLTRV* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2012 169 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 165 - -
Psa7g2012 169 PANTHER OS06G0666500 PROTEIN 21 165 - -
Psa7g2012 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 168 IPR013083 -
Psa7g2012 169 SMART ring_2 122 163 IPR001841 -
Psa7g2012 169 Pfam Ring finger domain 121 164 IPR001841 -
Psa7g2012 169 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Psa7g2012 169 SUPERFAMILY RING/U-box 121 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2012 Psa-Chr7 147804333 147805771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2012 18 169 C3H Transcription Factor Family AT1G20823 40.741 3.84e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2012 - - cam:101507208 260.766