Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g2002 ATGAGTTCATGTTCAGGAGACAAGCAAAACATGCATGAACAAACTGGTTGCTTTGATCCCAACACAATGGATGAAGGTATTGAAAATTCTCTAAAAGATAATAACTTTTCTCAAACTCATCCAAATCAAGTGGTTGAAAGTAATAATCATAATCATTCTGAGGAGGATTTCTCTTATCATAATCATAATCATAATACACAGCACCTTGATAATAGTTTGGTGCAAGAGGTGTATCAGAACTCAACTTGGGACACTAATGTTCATGAGTTACAAGGTATGGATTATGCAAATCACCAAGAACAACACCAACTACATGAACAACAGTTTCAACAAATTGTTGAGACACAAAACCATAACCAAACCTACAATCCGTCGAACATACTTGACCCTCATTACCCTTCACCCGATCTTTTAAACCTTCTCCATTTACCTAGATGCTCGGCTTCGTCTTTTCTCGTAAATCCGCCATCCAACATTTGTATGACAAACCTGAATCAAAAACCGCCGAATTTTCATAACTCAATGAGTTTTCTTGGAGATCTTCCGATTGGTTCGTCGGACAATACAAGTGGGTCGTCGGTTTTGTATGATCCTCTATTTCCTTTGAACCTTCCTCCACAGCCACCGGCCCTCAGAGAGTTGTTTCAATCTCTGCCTCGCGGATATAGCATGCCGACTAGCTCGAGGAACGGTTCTCTTTTCGGTGGAGGGGATGAGATGGAAGGAGATGGAGACATGGGAGTTCTGGAATTCAATAGGGTTGCTGCTAATGTTAGCAAAGGAAGAGGAGGAAAAGCTACAAAACATTTTGCAACAGAGAAACAAAGAAGAGAGCAATTGAATGGAAAGTACAAAATCTTGAGGGGTCTCATCCCAAATCCCACTAAGGTTGATAGAGCATCAGTGGTTGGAGATGCTATTGAGTATATAAGAGAGCTGATTAGAACAGTGAATGAGCTGAAACTATTGGTGGAGAAGAAAAGACATGGGAGGGAAATGTGCAAGACACATAAAGCTGAAGATGCTGCTGCAGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGAAGCATAAGGACTTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTGTCGATGATGATGTTACAATCAAACTGTTTCAGAGGAAGAAAGTTAATTGTTTACTCTTTGTCTCCAAGGTTCTGGATGAACTGCAGCTAGAACTTAACCATGTTGCAGGTGGACATGTCGGTGAATATTGCAGTTTCTTGTTCAACAGCAAGGTAAGTGAAGGTTCATCCGTTTATGCAAGTGCTATAGCCAACAAGGTGATTGATGTTCTGGACACCCAATATGCTGCTGGTGTTCCATATACAAGTAGGCTGTAG 1389 0.4111 MSSCSGDKQNMHEQTGCFDPNTMDEGIENSLKDNNFSQTHPNQVVESNNHNHSEEDFSYHNHNHNTQHLDNSLVQEVYQNSTWDTNVHELQGMDYANHQEQHQLHEQQFQQIVETQNHNQTYNPSNILDPHYPSPDLLNLLHLPRCSASSFLVNPPSNICMTNLNQKPPNFHNSMSFLGDLPIGSSDNTSGSSVLYDPLFPLNLPPQPPALRELFQSLPRGYSMPTSSRNGSLFGGGDEMEGDGDMGVLEFNRVAANVSKGRGGKATKHFATEKQRREQLNGKYKILRGLIPNPTKVDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGREMCKTHKAEDAAAESCNIKPFGDPDGSIRTSWLQRKSKDSEVDVRIVDDDVTIKLFQRKKVNCLLFVSKVLDELQLELNHVAGGHVGEYCSFLFNSKVSEGSSVYASAIANKVIDVLDTQYAAGVPYTSRL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g2002 462 Gene3D - 262 339 IPR036638 GO:0046983
Psa7g2002 462 Pfam Helix-loop-helix DNA-binding domain 267 313 IPR011598 GO:0046983
Psa7g2002 462 MobiDBLite consensus disorder prediction 1 20 - -
Psa7g2002 462 PANTHER TRANSCRIPTION FACTOR BHLH91 11 454 IPR045895 GO:0006355|GO:0048658
Psa7g2002 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 333 IPR036638 GO:0046983
Psa7g2002 462 SMART finulus 270 319 IPR011598 GO:0046983
Psa7g2002 462 CDD bHLH_AtMYC1_like 269 336 IPR045896 -
Psa7g2002 462 MobiDBLite consensus disorder prediction 1 17 - -
Psa7g2002 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Psa7g2002 462 PANTHER TRANSCRIPTION FACTOR BHLH91 11 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g2002 Psa-Chr7 145815843 145818008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g2002 11 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 39.655 9.33e-86 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g2002 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g2002 - - gmx:100782512 607.831