Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1986 ATGGCATCATCAAAGGTTGAAATTGCTTCCTTTGATTCAACAAAAAATCCAACATGGGTTTCAAGAGTTGCTAAGAATAATAACTTAGGAAACTTGAATTTGAATAAAAGATTTCATAATGTGTTTGTAGAAAAAGATGACTCTTCTTTGCCTGCATTGGTGAGTCCCAGGCATTCGAAGATAATCGACCGGTGGGCTGCGAGACAAGCTCAAGAAGTGGTGAGGAATCTTGAAAAGAATAATGAGGATGTTGCTGATAAGGTGTTTGATCATTTTCCTTCACGGTCGTCGAGTTTTAATTCTAGGAGAGGTAGAGAAGTTTCGGTTTCGCCTCCTCTTTCCGATGGATCAGAATCGTATGAAAGTGAAAAAACATTCAACCTTGGCGCTTCTTCGCTTGTTCAGATATGGGAGAAAAGGCTCAGTCAATCGAATTGCACGAAACAGAATGTGGCGTTGATTGGAAGGACTAGCTCTGATTCGAGTAGTAATGGGATAAGTGCATTTTCTGTGGAAGATCATAGCAGGGTCTCGGAAGAAGAGGAATCCTCTGACGAGCCGTTTCAGAATTGTTCTTCGAAAGTGCATTGTAATTTGGATGCGGGTGAAAGTGATAAAACTAAGGTTGCTGATATTATAAAGAAACTATCGATTACAAATCAAATGCAAAGTGATGAGAACGATACTGAGCTAAGTAACAGCGCGACAGGTTCTCCAAGTGTTTCCACACCAAAACAATTATCCGAACGTAGATGTTTTGGTAAGATCACAAACTACCCGCGTATTAGGGGGCGCCAAGCGTTCAATGACTTAATTATGCAGTTTGAGAGTGATCGACATGGAGAGCTCAACAATCTTGCAGAGCAAGGTGCAGTTTCTAAGTTCACACAAAGAGGCCGTATTCAGTCATTACTTCGACTTAGATTATTACAGCGTGGAGTAGCAGCTTTTGATCCACCCCGCTTGAAATCGACAACACCTGAAGGGAACAAACAACAACACGGATCAGTAATTATGCAACTTAGGGAAAGATTTAACACAAGAGATGAACAAAGAACTTCATCCTTGATAGAATTGTCAAAGCCAAGGTTGATATCAAAGAATTCAGTTTCTCAAACTAGTGCATATATCAAAGAAGAAGCTCAGTTATGTTCTGGTTTTGAAACTCAAAACGATGCTCCAAAAGAAATCGTTGAGGCATCGATATCAAAGACTGATTCAAACACGAACATTGAAACAACAGATAAAGTAGAGACAAGAGAACAACAATCATATGATACTATTGAAAACAGTTGCAGCGAGATATTGGAAGAGAATGACTGTAGTGACTATAATTATGATGAAACTAGAGAAAGTTATGACTGGGCCGGTTCCATTTCTCGGCCTAGAAGCTACTGGGAGGAAATTAGACAAGAATGGTACAGAGAAATGCTTGACTTTGGTTCGCACGATGACGAGAGACGCAAGCTCCTTGAAAGAAGAACAGTTTCAACTGTCCTTTCTAGTGACTTCCGAGGAAAGATGGATAAATTGATGAATTCTCATAGGGGAACACAAACACATCTAGTCAATAATCAAATCTACGAGGAAGAACGAGAAGGAAGTATGCAAGAATTGACGGCATTTTTTCACGACCGCTTCCACGTTAGAGGTAATCTCGAAGAAAATGGAAGAGATATGACGGAGAAAGAGGTGCCGGTGGAAGAGGAAAGCGTCAATAGTGGTTCAGATCATGAACTTGGTGATTCTCAATCCTCATCATCTGTAAATTCACCATCCTCAGCATCATGGAGTTATGGAGACACTGATGGTGGAGATGATTCTGATAGAGTCGTATTTGTATCCTCGCCATTGCCTTCACAATCTCAATCTTTCTATCAAGATAATAGGCAATACTGTCCATCGACAAACCATCAATCAATTGACATGGAATTCATATACGATATGCGAGGGCAAATGGAACAACTTTTTCGCGAGATGTCTGAGTTAAGGAAAACACTAAAATATTGCACAGACATGAATATGCAATTACAACAATCCCAGAAACAAGAAGTTCACAAGGTAAGAGAGAAGAAATTCACTAACAAGACATCAAAGAAAGGCAAATGCTGCATTTGCAATGAGAATAAAGTAAATGCAGTTTTATACAGATGTGGGCACATGTGTGCATGTTTCAAATGTGCAAGTGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGCCAAGTTGAAATAATAGATGTTGTTCAAGTATATACTAACACATAA 2268 0.3946 MASSKVEIASFDSTKNPTWVSRVAKNNNLGNLNLNKRFHNVFVEKDDSSLPALVSPRHSKIIDRWAARQAQEVVRNLEKNNEDVADKVFDHFPSRSSSFNSRRGREVSVSPPLSDGSESYESEKTFNLGASSLVQIWEKRLSQSNCTKQNVALIGRTSSDSSSNGISAFSVEDHSRVSEEEESSDEPFQNCSSKVHCNLDAGESDKTKVADIIKKLSITNQMQSDENDTELSNSATGSPSVSTPKQLSERRCFGKITNYPRIRGRQAFNDLIMQFESDRHGELNNLAEQGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPPRLKSTTPEGNKQQHGSVIMQLRERFNTRDEQRTSSLIELSKPRLISKNSVSQTSAYIKEEAQLCSGFETQNDAPKEIVEASISKTDSNTNIETTDKVETREQQSYDTIENSCSEILEENDCSDYNYDETRESYDWAGSISRPRSYWEEIRQEWYREMLDFGSHDDERRKLLERRTVSTVLSSDFRGKMDKLMNSHRGTQTHLVNNQIYEEEREGSMQELTAFFHDRFHVRGNLEENGRDMTEKEVPVEEESVNSGSDHELGDSQSSSSVNSPSSASWSYGDTDGGDDSDRVVFVSSPLPSQSQSFYQDNRQYCPSTNHQSIDMEFIYDMRGQMEQLFREMSELRKTLKYCTDMNMQLQQSQKQEVHKVREKKFTNKTSKKGKCCICNENKVNAVLYRCGHMCACFKCASELQWKSGKCPICQVEIIDVVQVYTNT* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1986 755 MobiDBLite consensus disorder prediction 221 247 - -
Psa7g1986 755 SMART ring_2 703 741 IPR001841 -
Psa7g1986 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 753 IPR013083 -
Psa7g1986 755 MobiDBLite consensus disorder prediction 100 121 - -
Psa7g1986 755 CDD mRING-HC-C3HC5_NEU1 703 741 - -
Psa7g1986 755 MobiDBLite consensus disorder prediction 577 601 - -
Psa7g1986 755 MobiDBLite consensus disorder prediction 554 576 - -
Psa7g1986 755 ProSiteProfiles Zinc finger RING-type profile. 703 742 IPR001841 -
Psa7g1986 755 Coils Coil 67 87 - -
Psa7g1986 755 PANTHER BNAC05G24000D PROTEIN 15 391 - -
Psa7g1986 755 PANTHER BNAC05G24000D PROTEIN 382 754 - -
Psa7g1986 755 Pfam Zinc finger, C3HC4 type (RING finger) 700 747 - -
Psa7g1986 755 SUPERFAMILY RING/U-box 702 748 - -
Psa7g1986 755 MobiDBLite consensus disorder prediction 163 190 - -
Psa7g1986 755 MobiDBLite consensus disorder prediction 554 602 - -
Psa7g1986 755 PANTHER BNAC05G24000D PROTEIN 15 391 - -
Psa7g1986 755 PANTHER BNAC05G24000D PROTEIN 382 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1986 Psa-Chr7 145212102 145215919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1986 702 755 C3H Transcription Factor Family AT3G06140 35.185 4.11e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1986 - - mtr:MTR_4g094795 958.362