Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1983 GACTTTACCTAACACCAGCTCAGAGAGAAGCAGTTGAAGCATTGATTCAGGAACTTCCAAAGTTCATGTTAAAGGTTGTTCCTACGGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCGTGTTGGGAATAAGGTTCATGGCTTGCCTTGTGCACACAATTTTCATGTTGAATGCATTGACGAGTGGCTCAGGCTGAATGTGAAATGTCATCGTTGCCGTTGCTCAGTGTTTCCAAATCCTGATCTTAGTGCCCCGTCCAATCTCCGTCCAGATTCTGAGCGATCTTCTGCCAGTGTTGTGACAACAACTAGCTATACCAATTGTCTAAAATTTAACAAGAAAAGAAATGCTTATCATGATTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCAGAGCTATTTCAGAGAGCAGTGCATATTACTCCTCTTATGGCACATAAGCTCATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCACCAATATTCAGTCTACAAGGAAGCCTACCGAGAATCCAAAAGCAGTTGCAAAATTTGAGTGGCGAGCAAAAGTGA 581 0.4234 LYLTPAQREAVEALIQELPKFMLKVVPTDCSECPICLEEFRVGNKVHGLPCAHNFHVECIDEWLRLNVKCHRCRCSVFPNPDLSAPSNLRPDSERSSASVVTTTSYTNCLKFNKKRNAYHDLAMAKLKEGNVNAASELFQRAVHITPLMAHKLIQTLKSENIEFVVAPPIFSLQGSLPRIQKQLQNLSGEQK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1983 192 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Psa7g1983 192 SMART ring_2 33 73 IPR001841 -
Psa7g1983 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 79 IPR013083 -
Psa7g1983 192 SUPERFAMILY RING/U-box 27 83 - -
Psa7g1983 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 137 IPR044793 GO:0004842|GO:0010182
Psa7g1983 192 SUPERFAMILY PIN domain-like 113 168 IPR029060 -
Psa7g1983 192 Gene3D - 107 169 - -
Psa7g1983 192 Pfam Ring finger domain 32 74 IPR001841 -
Psa7g1983 192 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1983 Psa-Chr7 144956040 144956699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1983 1 119 C3H Transcription Factor Family AT3G47990 65.546 1.07e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1983 K16284 - nnu:104593208 191.045