Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1976 ATGGTTGCCCAACACCCGCAGCTTCAGATTCAGACCCAACAACCTACACCTTCTCCTCAAGATGAAGCCTTGAAGAGAAACACCGATTGTGTATACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCCAGAGATTGCTACTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCGTTCCGTCATCCGCCTCTTGATGGGTTGTTAGGAACACCACCGGCAACTGCTCCTGCCGGACCATCTGTACCCGTGCCACAGATTGCAACAACATCTGCGGCGCACACACCGTATAATTCTAGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAGGGATTTTGCTTAAAAGGAGACAGATGTGCCTTCATGCATGGACCAATTCCTAATAATGGCAGTAAAATAGCTACACAGAGCTCGATGACCAACCAAGGAGCTGAGAATCCAAATTTGAAGAAACCTTATGTCGGCACTGAAAAACATACTCAGGAAAGGAAAACTTCCCAAGCAAATGTTGGAGGTGCAGCTGAAGCTAAACCTGTCAATTTCAAAAAATTTGAACCTGCTCCACCAAAAAATATATTTAAATTGGAGAAGCATGTGCCGACTCAACCTGCAGCAGGATTTGACAACGAGGCTTCAAGATTTAAGACACCTAGTTCTCCACCGCCGACCAACGGGCCTAATGTAGCCCGGTCTAATCGTGTGCATCAACCTCGTTTGCCGGATGATCACAGTTTCCATAGTGGTAAGGACAGTGACGAGTTTCTCAGAGAATCGTCTCCTGGGTTTGATGTTCTTGTAGCTGACGAACTTAGGAATTCCGATTACTATCACGGGGAAGATGAATTTGGTATAACAAGAGGTCAAAATGAAAGAGGCCTAGACCCTTTGAATGAATATGATATGGGGCATTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGGTTGGGAACCTAGGAAGGCATCAACCCATATAGAAAGGACTCGTAACAGTTCTCGCAGTCCTGATAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGTCTAAAATCTGTCGTCACTCATGACGAAGAGCAAAGTCGTCGTTTCTCTCGGAAAGATTCGCTCCACTTACCTTCGAATGAGAGATCCGTCAATAATCGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGGAGCCGGTGCAGCCTCCTCCCAGAGCAGCAAATCAGCCTATAATAATAAGAATGAAGGAATTACCGAAAACGGATCATTGTTGAAGACTAATGTAGAAGAATCCAAGAATCAGGCTGCTGATGTTGCTGGAAGAGAGGTTGACAACACTAATGTAACTCATCAGTCGCCTGAGGATGGAATAATATACGACGAAGCTGCCGAAGAACAAGAGTATGAAGGAGAGGAAGGAGGAGACTATGAATATGAACAAGGTGATGAGGAGTATGAGTATGAACAAGTCGATGAGGGGGAAAATCAAGAGCAAGAATATATGGAAGAAGAGGAAGATGGAGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA 1683 0.4433 MVAQHPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGLLGTPPATAPAGPSVPVPQIATTSAAHTPYNSSKQAVPCIFFQKGFCLKGDRCAFMHGPIPNNGSKIATQSSMTNQGAENPNLKKPYVGTEKHTQERKTSQANVGGAAEAKPVNFKKFEPAPPKNIFKLEKHVPTQPAAGFDNEASRFKTPSSPPPTNGPNVARSNRVHQPRLPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGITRGQNERGLDPLNEYDMGHSADYSLAADIDRDRFRVPQGYDSYDHMQEPYGWEPRKASTHIERTRNSSRSPDSVEVSDLRHRLSKRRKGLKSVVTHDEEQSRRFSRKDSLHLPSNERSVNNRPKPLSEILKEKKGVGAGAASSQSSKSAYNNKNEGITENGSLLKTNVEESKNQAADVAGREVDNTNVTHQSPEDGIIYDEAAEEQEYEGEEGGDYEYEQGDEEYEYEQVDEGENQEQEYMEEEEDGDDFAKKIGVVLS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1976 560 Pfam Zinc-finger containing family 25 79 IPR041686 -
Psa7g1976 560 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 11 423 - -
Psa7g1976 560 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 424 560 - -
Psa7g1976 560 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Psa7g1976 560 Gene3D - 16 81 - -
Psa7g1976 560 Gene3D - 106 182 - -
Psa7g1976 560 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Psa7g1976 560 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Psa7g1976 560 MobiDBLite consensus disorder prediction 224 246 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 391 414 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 341 459 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 154 202 - -
Psa7g1976 560 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Psa7g1976 560 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Psa7g1976 560 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Psa7g1976 560 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 424 560 - -
Psa7g1976 560 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 11 423 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 1 22 - -
Psa7g1976 560 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Psa7g1976 560 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Psa7g1976 560 MobiDBLite consensus disorder prediction 499 547 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 349 383 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 440 459 - -
Psa7g1976 560 MobiDBLite consensus disorder prediction 471 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1976 Psa-Chr7 144652467 144655516 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa7g1976 zf-CCCH_3 4.1e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1976 - - gmx:100787836 603.208