Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1975 ATGCTGGCCCCACATCTTCTGCGGAGAGTGAAGAAAGTTGTCATGAAGGAACTACCTCCTAGAAAGGAACTTATTCTACGAGTTGATTTGAGCAGCAAACAGAAGGAGTATTATAAGGCAATTTTGACTCCCGTTGAAGAAACACCGGAAGATGGCAAGATATTGCCATTATTTGGAGCTAAGCGAAAACGCGACGCAGAGAGCGGCAAGAGCGTGACTGTCCATCCTCACCGTAGAAGAGGTTCATCAAGCATATTACTGGAAGTTACTCTTCCATATGTTGGAGCAGAATGTGTGAAGCTACCAATTCTGCCTGTCTCAAAGGCCAATTCAGGTATCCATTTTCGTCATGGCTTGGTCAAAGAAAGGATGCTGCCACTGCAGTTCTTCCGGTGGATGAGCGGAATGAAGAGGCTGATAGATTTGCTGGAGTGTATCCTGAACACAAATGGGAAATTGCAGCAAGAGAGGAAACATATATGTGGAATGACGGGTGATGGCGTCAACGGTGCTCCTGCACTAAAGAAAGCAGATGTTGAAATTAAGGTTGACGACGCTACAGATGCCGCTAAACTTGGTCCAAATGATAATGCAGTGCTCACCAGATTTCAATCACCGTTCGTGTTATGGACGGATTCATGTTCATTGCATGGTGCTGGAAGTCTAATTTTGCACCCCTCATGGTGTTGA 690 0.4551 MLAPHLLRRVKKVVMKELPPRKELILRVDLSSKQKEYYKAILTPVEETPEDGKILPLFGAKRKRDAESGKSVTVHPHRRRGSSSILLEVTLPYVGAECVKLPILPVSKANSGIHFRHGLVKERMLPLQFFRWMSGMKRLIDLLECILNTNGKLQQERKHICGMTGDGVNGAPALKKADVEIKVDDATDAAKLGPNDNAVLTRFQSPFVLWTDSCSLHGAGSLILHPSWC* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1975 229 Gene3D - 1 18 IPR038718 -
Psa7g1975 229 SUPERFAMILY HAD-like 150 191 IPR036412 -
Psa7g1975 229 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 43 - -
Psa7g1975 229 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 1 43 - -
Psa7g1975 229 Gene3D - 19 44 IPR027417 -
Psa7g1975 229 Gene3D - 154 191 IPR023214 -
Psa7g1975 229 Pfam SNF2-related domain 1 45 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1975 Psa-Chr7 144543665 144545829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1975 155 196 Primary Pumps ATPases AT3G60330 78.571 3.15e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa7g1975 SNF2_N 1.9e-06 CL0023