Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1959 ATGATTCAGAAGGATCCAAATGGAGTCTTATCAGGTTGGAATCCAAACACCAATCCATGCACCTGGTTTGGCATCACTTGCACCCTTGGAAGAGTCACTGGTTTAGAAGTTACGGGAAACAATGATATTTCCGAAACTATTTCGCTTGATCCTTTATTCTCTTTAGATATGTTATCTGTTTTGAAACTTTCTCTCAATTCATTTTCTGTAAATTCTTCTTCTTTGCTTCTGTTACCATATAGTTTAACTCAACTTGATCTTTCCTTTGGTAAAGTCACAGGTCCTGTCCCTGAGAATTTATTCTCCAACTGTCCTAATCTTGTTGTTGTGAATCTTTCTTACAACAATTTGACAGGTCCTATTCCTGAAAATTTTATACAAAATTCTGATAAACTTCAGTCTCTTGATCTATCTTCAAACAATTTGACAGGTTCGATTTCTGGTTTGAGAATTGAGTACTGCAAATCCTTGTTGCAGATTGATCTATCAGGAAACCGTTTATCGGACTCAATACCGGTTTCTCTGTCGAATTGCACTAGCCTTAAGAGTTTGAATTTAGCAAACAATTTTATATCTGGTGGAATTCCGAAGAGTTTAGGTGAATTGAAGAGATTACAGACTTTGGATCTTTCACACAATCAAATTACTGGTTGGATCCCTTCTGAGTTGGGAAATGTTTGTGGTTCTCTTATAGAACTTAAACTTTCTTTCAACAATATTACCGGTTCGATTCCGTCTGGTTTCAATTCTTGCACTTGGCTGCAGCTTGTTGATATATCCAACAATAATATGACAGGTGAATTGCCCGAGTCGGTGTTTCGGAGCCTTGGATCATTGCAGGAACTTAGGTTGGGAAATAATGCTATCTCTATGAAGTTTCCATCGTCATTATCTTCATGCAAGAAACTGAGGATTGTGGATTTCAGCTCGAATAAGGTTTATGGAACCATCCCTAGAGATTTGTGTCCAGGTGCAGGCTCACTTGAAGAACTGAGAATGCCTGATAATCTCATAACAGGTGAGATTCCTGCTGAATTGTCGAAGTGTTCGCAGTTGAAGACTATTGATTTTAGTTTGAATTATTTGAACGGTTCGATTCCGGATGAGTTAGGAGAGCTTGAGAATCTTGAGCAGTTGATAGCATGGTTCAATGGTTTGGAAGGAAAAATTCCACCAAAGTTGGGACAATGTAAGCATCTTAAGGATTTAATATTGAATAACAATCACCTTAGTGGTGAAATTCCTATTGAGTTGTTTAATTGCAGCAATCTTGAATGGATATCACTCACAAGCAATGAACTCACTGGCGAAATACCGAAAGAGTTCGGACTTTTGACGAGGCTAGCTGTTCTTCAGCTTGGAAACAATAGCTTCACAGGTGAGATACCATCAGAGCTAGCAAATTGTAACAGTTTGGTGTGGTTGGATTTGAACAGCAACAAGCTCACAGGAGAGATCCCTCCTAGACTTGGAAGACAGCAAGGAGCGAAATCGTTGTTTGGTATTCTCTTAGGAAACACTTTGGTGTTTGTACGAAACGTCGGAAACTCATGTAAAGGTGTTGGAGGTTTGTTAGAATTCTACGGAATCAGGTCCGAACGGCTTTCGCAGATACCGACATTGAGGTCTTGTGATTTCACAAGACTCTATTCTGGTCCTGTGCTTAGCTTGTTTACCAAGTATCAGACTCTTGAGTATCTTGACCTCTCTTACAATCAGCTTCGTGGAAAAATACCGGACGAATTCGGAGATATGATTGCATTACAGGTACTTGAGTTGTCTCACAATCAACTATCTGGTGAAATCCCTTCATCCCTTGGCCAGCTCAAAAATTTGGGAGTTTTTGATGCATCACATAATAGACTTCAGGGTCATATCCCAGATTCATTCTCAAACCTATCCTTTTTGGTACAAATAGATCTATCTTACAATGAGTTAACAGGTCAAATTCCATCTAGGGGACAGCTTAGCACACTTCCAGCCACTCAGTATGCAAACAATCCCGGCCTTTGTGGCGTTCCGTTGCCCGACTGCAAAAACGACAACGGCCAATCGACAACGAGTCCAAGTGATGATGTTAGCAAAGGAAGCCATAGAAGATCAGTTGCATCATGGGCAAACAACATTGTCATGGGAGTTCTCATTTCTGTTGCTTCTGTATGTATTTTGATTGTGTGGGCGATCGCGATGCGCGTAAGGAGGAAAGAGGCCGATGAAGTGAAGATGCTTAAAAGATTGCAAGCATGCCATGCTGCTACGACATGGAAAATCGACAAAGAGAAAGAGCCGTTAAGCATTAATGTTGCAACATTTCAGAGGCAGTTAAGGAAGCTTAAATTCTCACAGTTGATTGAAGCAACCAATGGCTTCTCAGCAGAAAGCCTAATTGGTTGTGGTGGTTTCGGTGAAGTGTTCAAGGCGACGCTTAAAGACGGATCATCTGTCGCGATAAAGAAACTCATTCGACTCAGTTGCCAAGGCGATAGAGAGTTCATGGCTGAGATGGAAACCTTAGGAAAAATCAAGCATAGAAATCTTGTCCCTTTGTTAGGATACTGCAAAGTAGGTGAAGAGAGGCTACTTGTTTATGAGTACATGGAATATGGAAGCTTAGAAGAGATGCTCCACGGAAGAATAAAGACGCGCGATCGACGCATTTTAACATGGGAAGAAAGGAAGAAAATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTTCTGCATCACAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGTTACTTGATCATGAAATGGAGTCAAGGGTCTCGGATTTCGGAATGGCAAGACTAATAAGCGCGCTCGATACACATCTTAGCGTAAGCACACTAGCAGGAACACCCGGATATGTTCCGCCAGAATACTATCAAAGCTTCAGGTGCACTGCAAAGGGCGATGTTTACTCATTTGGTGTTGTAATGTTGGAACTTCTCAGCGGGAAGCGTCCGACCGATAAAGAGGATTTCGGCGACACAAACTTGGTCGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAAATGGAAGTGATTGATAGTGATTTGCTTTTGGAGACTCAAGGAGGAACAAATGAAGCAGAAGTGAAAGAAGTGAAAGAAATGTTGAGATATTTGGAGGTTACTTTGCGGTGTGTCGATGATTTGCCGTCGAAAAGGCCAAGCATGTTGCAGGTAGTTGCCATGTTGAGAGAGCTTATGCCTGGATCAAATGAAGGAAGCAGCAACAGTGGTTAA 3267 0.4132 MIQKDPNGVLSGWNPNTNPCTWFGITCTLGRVTGLEVTGNNDISETISLDPLFSLDMLSVLKLSLNSFSVNSSSLLLLPYSLTQLDLSFGKVTGPVPENLFSNCPNLVVVNLSYNNLTGPIPENFIQNSDKLQSLDLSSNNLTGSISGLRIEYCKSLLQIDLSGNRLSDSIPVSLSNCTSLKSLNLANNFISGGIPKSLGELKRLQTLDLSHNQITGWIPSELGNVCGSLIELKLSFNNITGSIPSGFNSCTWLQLVDISNNNMTGELPESVFRSLGSLQELRLGNNAISMKFPSSLSSCKKLRIVDFSSNKVYGTIPRDLCPGAGSLEELRMPDNLITGEIPAELSKCSQLKTIDFSLNYLNGSIPDELGELENLEQLIAWFNGLEGKIPPKLGQCKHLKDLILNNNHLSGEIPIELFNCSNLEWISLTSNELTGEIPKEFGLLTRLAVLQLGNNSFTGEIPSELANCNSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILLGNTLVFVRNVGNSCKGVGGLLEFYGIRSERLSQIPTLRSCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGKIPDEFGDMIALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGQIPSRGQLSTLPATQYANNPGLCGVPLPDCKNDNGQSTTSPSDDVSKGSHRRSVASWANNIVMGVLISVASVCILIVWAIAMRVRRKEADEVKMLKRLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDSDLLLETQGGTNEAEVKEVKEMLRYLEVTLRCVDDLPSKRPSMLQVVAMLRELMPGSNEGSSNSG* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1959 1088 SMART LRR_typ_2 373 397 IPR003591 -
Psa7g1959 1088 SMART LRR_typ_2 445 469 IPR003591 -
Psa7g1959 1088 SMART LRR_typ_2 202 226 IPR003591 -
Psa7g1959 1088 SMART LRR_typ_2 585 609 IPR003591 -
Psa7g1959 1088 SMART LRR_typ_2 471 493 IPR003591 -
Psa7g1959 1088 SMART LRR_typ_2 398 421 IPR003591 -
Psa7g1959 1088 SMART LRR_typ_2 276 300 IPR003591 -
Psa7g1959 1088 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 1077 - -
Psa7g1959 1088 ProSiteProfiles Leucine-rich repeat profile. 204 225 IPR001611 GO:0005515
Psa7g1959 1088 CDD STKc_IRAK 796 1076 - -
Psa7g1959 1088 ProSitePatterns Protein kinases ATP-binding region signature. 796 819 IPR017441 GO:0005524
Psa7g1959 1088 ProSiteProfiles Leucine-rich repeat profile. 131 153 IPR001611 GO:0005515
Psa7g1959 1088 SMART serkin_6 790 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g1959 1088 Gene3D Ribonuclease Inhibitor 50 678 IPR032675 -
Psa7g1959 1088 SUPERFAMILY RNI-like 29 290 - -
Psa7g1959 1088 SUPERFAMILY RNI-like 208 653 - -
Psa7g1959 1088 Pfam Leucine rich repeat N-terminal domain 3 27 IPR013210 -
Psa7g1959 1088 Gene3D - 503 559 - -
Psa7g1959 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Psa7g1959 1088 Pfam Brassinosteroid receptor island domain 500 558 IPR045381 -
Psa7g1959 1088 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 1077 - -
Psa7g1959 1088 Gene3D Phosphorylase Kinase; domain 1 749 865 - -
Psa7g1959 1088 SMART LRR_sd22_2 609 635 - -
Psa7g1959 1088 SMART LRR_sd22_2 129 151 - -
Psa7g1959 1088 SMART LRR_sd22_2 202 223 - -
Psa7g1959 1088 Gene3D Transferase(Phosphotransferase) domain 1 866 1086 - -
Psa7g1959 1088 ProSiteProfiles Protein kinase domain profile. 790 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g1959 1088 SUPERFAMILY Protein kinase-like (PK-like) 771 1073 IPR011009 -
Psa7g1959 1088 PRINTS Leucine-rich repeat signature 132 145 - -
Psa7g1959 1088 PRINTS Leucine-rich repeat signature 202 215 - -
Psa7g1959 1088 Pfam Protein tyrosine and serine/threonine kinase 793 1073 IPR001245 GO:0004672|GO:0006468
Psa7g1959 1088 Pfam Leucine rich repeat 159 215 IPR001611 GO:0005515
Psa7g1959 1088 Pfam Leucine rich repeat 422 482 IPR001611 GO:0005515
Psa7g1959 1088 Pfam Leucine rich repeat 557 598 IPR001611 GO:0005515
Psa7g1959 1088 Pfam Leucine rich repeat 81 142 IPR001611 GO:0005515
Psa7g1959 1088 Pfam Leucine rich repeat 254 312 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1959 Psa-Chr7 143517861 143521534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1959 2 1085 Receptor kinase-like Gene Family AT1G55610 48.000 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Psa7g1959 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1959 - - gmx:100789959 1916.74