Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1891 ATGGATGATTGTGAATTGCAGGCCAAAGAGAATATGGTATTTGCTGCACAACTGTTGTCAACGGAAGCTGTCTTTGCATTGTTATTACACACAGCAATGAAAACTGAAATCGGAAAGATACAGAAACAAATACACGAGGCTTCGTTGGAGGAGAGTGATACTCCGTTGAAAAAGAAATTGGACGAATTTGGTAGCAGGCTAACAACTTCAATCGGAATAGTTTGTCTCGGTGTGTGGATTATAAACTACAAAATTTCATTTCTTGGGATATTGTCGATGGATGTCCTTCGAACATTCAATTTCGTTTCAGAAATGCATTTACTATTTCAAAATTGCTGTTGCTCTTGCTGTGGCTGCAATACCAGAAGTCTTCCAGCTGTATCAACAACATGTTTAGCGCTCGGTACAAGGAAAATGGCGCAAAAAGATGCGATTATGGGATTTCCAGATATCAAGTCAAGGAACAAAACTCGCGACATCCAAGGTTCATCAAACAACACGATGGATTGCGACACCTTGAAGCTAGGAGGTAGTGTGTGGTGGAATAGAAGATCCAAACGGGTAGCTACGTTGGAGTTTGACCGTGTTAGGAAGTCGATGAGCGTTATTGTTCGCGAACCGGATGGTCAAAATCGGCTTCTTGTAAAGGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGCAAGCAAGCTGGTATTAGAGTTATGGTAATAACCGGAGATAACAAGTCAACAGCAGAGGCTATTTGTAAGGAAATCGGACTTTTCTCTAGAGATGAAGATCTTACAGAACAAGTTAAATTGCTGTTGAGAAATGGAGGCAAGGTTTTCTCGCGAGCCGAGCCAAGACACAAGCAAGAAATTGTGAGACTGTTGAAGGAAATGGGAGAGATTGTTGCAATGACCGGAGATGGCGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAACTGAGAATTACTCAATCTTCTTCAGCAGCTTTAGGGATCCCAGAATGCATGATACCAGTACAACTTCTGTGGTGAATTTGGTCACTGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCAGGCAGAAGCCACCACGAAAAAGCGATGATGCCCTTAAGTACTTGGGTTCTTTTTCGTTACCTAATAATTGGTTCCTATGTCGGAATCGCAACAGTTGGCATTTTTGTCTTGTG 1233 0.4242 MDDCELQAKENMVFAAQLLSTEAVFALLLHTAMKTEIGKIQKQIHEASLEESDTPLKKKLDEFGSRLTTSIGIVCLGVWIINYKISFLGILSMDVLRTFNFVSEMHLLFQNCCCSCCGCNTRSLPAVSTTCLALGTRKMAQKDAIMGFPDIKSRNKTRDIQGSSNNTMDCDTLKLGGSVWWNRRSKRVATLEFDRVRKSMSVIVREPDGQNRLLVKDPPREEVHKAIEDCKQAGIRVMVITGDNKSTAEAICKEIGLFSRDEDLTEQVKLLLRNGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTENYSIFFSSFRDPRMHDTSTTSVVNLVTDGPPATALGFNPADVDIRQKPPRKSDDALKYLGSFSLPNNWFLCRNRNSWHFCLV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1891 411 PANTHER CALCIUM PUMP1 216 329 - -
Psa7g1891 411 PANTHER CALCIUM PUMP1 169 216 - -
Psa7g1891 411 PANTHER CALCIUM PUMP1 352 385 - -
Psa7g1891 411 PANTHER CALCIUM PUMP1 4 146 - -
Psa7g1891 411 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 277 330 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa7g1891 411 Pfam haloacid dehalogenase-like hydrolase 164 318 - -
Psa7g1891 411 Pfam E1-E2 ATPase 9 142 - -
Psa7g1891 411 SUPERFAMILY Calcium ATPase, transmembrane domain M 40 387 IPR023298 -
Psa7g1891 411 Gene3D - 7 146 - -
Psa7g1891 411 Gene3D - 195 332 IPR023214 -
Psa7g1891 411 PRINTS P-type cation-transporting ATPase superfamily signature 211 222 - -
Psa7g1891 411 PRINTS P-type cation-transporting ATPase superfamily signature 233 243 - -
Psa7g1891 411 PRINTS P-type cation-transporting ATPase superfamily signature 304 323 - -
Psa7g1891 411 Gene3D - 333 392 - -
Psa7g1891 411 SUPERFAMILY HAD-like 213 329 IPR036412 -
Psa7g1891 411 PANTHER CALCIUM-TRANSPORTING ATPASE 169 216 - -
Psa7g1891 411 PANTHER CALCIUM-TRANSPORTING ATPASE 352 385 - -
Psa7g1891 411 PANTHER CALCIUM-TRANSPORTING ATPASE 4 146 - -
Psa7g1891 411 PANTHER CALCIUM-TRANSPORTING ATPASE 216 329 - -
Psa7g1891 411 Pfam Cation transporting ATPase, C-terminus 352 385 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1891 Psa-Chr7 138584160 138586750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1891 215 385 Primary Pumps ATPases(2) AT4G00900 56.223 7.77e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1891 K01537 - gmx:100792952 245.743