Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1831 ATGCAGTTTGATTCAGATTCAGACTCCGACGGATCTCACGTCTCCACAACGCCTCCAAGGCAAACAAGCCCACCGCCACCATTACCACCAAAACCACCGCGTCCAGTTTCCAACAAAAAATCCAAAATCAAAACCAAACCCTCAAAATCCAATAAACCCCCTTCAAAACCTCCCGAAACTCTCATCCAACAAGAAGATAATTTCCCACTCCCTTCCATCACTTCCCTTCCTTTCCAAATCCGACTCAGAACTTCCGACGGACCTTCAACTTCATCTTCCCACTCCATGGAAACCCTCCCTGCTGGCTTCTTCTCCAAATCAATTTCATTCTCCAAAATTCGTAAACCCTTACTCAATCTAGAACCTTCTGAATCCCAACCAGTTCTTAACTCCCCCAAAACCATCGTGCATTCTGCGGAGAAACCTCCCAATTTGATCGGTGCTAAGAAACCTCCCAATTTAAGTGATGCTAAGAAGCCTCCTAATTTGATTGCTGCTAAGAAACCTCCTAATTTGATTGGTGCTAGTTTGCCAACGCCGGCAGTGAAGGTACTACGAGGCGCCGGAGAAGGAAATTTTGTGAAATTGAATTTGAGTGGTAAGAGGAAAAAGTTTTTGAATAAAGGGTGGAAGAAAAATGGAAAATTTGGCAGTGGTAAAAGGTATAGAAGAAATAGTTATAGTAATAGTAGTAGTAAAAATAAACGTACAAAATTGGAAGGTGAAGGGGAGGACAATGAGGAGGATGGTTTGGGTTTAGAGAATGCAAAGCAAAAACAGAAGCAAAATGGTTGGGAAATTGAGTGCAAAGTGTTGGAGGAGGCTGTGTTAGCAGCAAGAGCTGAAGCTTCTGATGAGAATTTGGTGAAGCTGTTGAAATTGATTCATGGTTATGATTCTTTTCGAGAAGGGCAGCTTGAGGCTATCAAGAATGTTCTTGCTGGGAAGTCAACTATGCTTATTTTGCCCACTGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCGTTGATTTTGCCCGGGATTACACTTGTTGTTAGTCCATTGCTAGCTTTGATGATTGACCAGCTTAAGCAATTGCCTCCACTCATTTCGGGTGCCATCCTAAGCAGTGCGCAAACGCTTGAGGAATCATCTGAAACGCTCAGCCAGCTTCGGCAAGGCACAATAAAGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTTTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCAAAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACTTTAGATTCCATCATGTCTGCCCTAGATATTCCTTTCATAAATCTTATTCAGAATGCACACTTAAGGGACAATCTGCGTTTGTCGGTGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATCAAGTCTCCTCCTTTCACGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACCTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCTACGTACAGGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGTGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGGAGGGATGGGAGATTGTCCTATTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTCCGTAGTCTAATGTATAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCCGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGATATGAAGGAAGAGGTGATTCTCACAGTTTTGACACGCTTAGAGCTGGGTGATGTGCAGTACTTACAATTACTTCCACAGACAAATGTTACTTGTCTTCTGAATTTTTATAAGACTCCGGCTGCGTCCCTTGCCCAAAAGATTTCTGCTATTGCTGTGATTCTGAAAAGATCTGAAAATAAGCACGGACAACATACTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTCACACCATTTGAATTAACAAATCAGCTGTATGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAAGACATGGCCTACTGTTATAGGATTCTTGAAGTTCCAACAGACTTTTTGTCTCTATCGGCAGATATTACCCAATGGTTATCTGAAGTTGAAAGTTGTAAGGTGCGGAAAATGGATGCAATGTTTAATGCTGCATATTTTGCAGTCAATCTATGTGATAAGATGAACGATTGCAGTAGTGCTGATCACACTTCATGTTTGCAAAGGATAATATTGGACTACTTTGCTGGAGTTGATAATATTGATTTCTGCCAGAAAATTGATCAAAGCAGTCCTTTCCTGCGAGCAGATATAAAGGTCTTTCTACAGAGCAATTCACATGCCCGCTTTACACCAAGAGCTGTTGCGAGGGTAATGCACGGAATTGCAAGCCCAGCCTACCCATATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAAGTGGTGATGGAAGCAGCTAAGGAAGAGCTTAAAAAATCTGTTGGGAAGGATATTCTGTAG 2817 0.4132 MQFDSDSDSDGSHVSTTPPRQTSPPPPLPPKPPRPVSNKKSKIKTKPSKSNKPPSKPPETLIQQEDNFPLPSITSLPFQIRLRTSDGPSTSSSHSMETLPAGFFSKSISFSKIRKPLLNLEPSESQPVLNSPKTIVHSAEKPPNLIGAKKPPNLSDAKKPPNLIAAKKPPNLIGASLPTPAVKVLRGAGEGNFVKLNLSGKRKKFLNKGWKKNGKFGSGKRYRRNSYSNSSSKNKRTKLEGEGEDNEEDGLGLENAKQKQKQNGWEIECKVLEEAVLAARAEASDENLVKLLKLIHGYDSFREGQLEAIKNVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLLALMIDQLKQLPPLISGAILSSAQTLEESSETLSQLRQGTIKVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLQRSLNVGSVLAMTATATTTTLDSIMSALDIPFINLIQNAHLRDNLRLSVSLIKNRMKDLLVLIKSPPFTEVKSIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGYVQELFGSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFLSEVFPADKSSCGKIRSLIKESASRRFDMKEEVILTVLTRLELGDVQYLQLLPQTNVTCLLNFYKTPAASLAQKISAIAVILKRSENKHGQHTFDIPTVANDMGVTPFELTNQLYDLKLKGEITYEMKDMAYCYRILEVPTDFLSLSADITQWLSEVESCKVRKMDAMFNAAYFAVNLCDKMNDCSSADHTSCLQRIILDYFAGVDNIDFCQKIDQSSPFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKKSVGKDIL* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1831 938 Pfam Helicase conserved C-terminal domain 516 610 IPR001650 -
Psa7g1831 938 Gene3D - 487 677 IPR027417 -
Psa7g1831 938 PANTHER DNA HELICASE RECQ FAMILY MEMBER 50 860 - -
Psa7g1831 938 MobiDBLite consensus disorder prediction 1 74 - -
Psa7g1831 938 CDD DEXHc_RecQ4-like 289 486 - -
Psa7g1831 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 623 IPR027417 -
Psa7g1831 938 MobiDBLite consensus disorder prediction 217 257 - -
Psa7g1831 938 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 291 649 IPR004589 GO:0004386|GO:0006310
Psa7g1831 938 Gene3D - 271 476 IPR027417 -
Psa7g1831 938 MobiDBLite consensus disorder prediction 1 18 - -
Psa7g1831 938 SMART ultradead3 297 495 IPR014001 -
Psa7g1831 938 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 309 479 IPR014001 -
Psa7g1831 938 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 650 IPR001650 -
Psa7g1831 938 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 416 425 IPR002464 -
Psa7g1831 938 Pfam DEAD/DEAH box helicase 304 465 IPR011545 GO:0003676|GO:0005524
Psa7g1831 938 MobiDBLite consensus disorder prediction 55 74 - -
Psa7g1831 938 CDD SF2_C_RecQ 487 620 - -
Psa7g1831 938 SMART helicmild6 530 611 IPR001650 -
Psa7g1831 938 PANTHER ATP-DEPENDENT DNA HELICASE Q4 50 860 - -
Psa7g1831 938 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1831 Psa-Chr7 132473612 132481894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1831 520 643 Eukaryotic Initiation Factors Gene Family AT3G19760 30.952 1.24e-12 68.9