Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1817 ATGCATGCAGATACAGAGACAGATGAAGTGTATGCCCAGATGACCTTGCAACCTCTAAATCCGGATGAGCAAAAGGAGGCATATCATCCTGCAGAGCTGGGAACTGCAAATAAACAGCCGACAAACTACTTTTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGTGCAGCTGAAAAAGTTTTCCCTCCACTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGCAATGACTGGAAATTCAAACATATCTTCCGTGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTCGTTGCTGGTGATTCAGTACTGTTTATATGGAATGAAAAAAATCAGTTGCTTCTAGGCATTCGTCGTGCCAATCGACCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACAAACAGTCGTTTCACCATTTTCTATAATCCACGTGCCAGCCCATCAGAATTCGTCATTCCCCTAGCGAAGTATGTTAAAGCTGTATATCACACCCGAGTTTCAGTTGGTATGCGCTTCAGAATGCTTTTTGAAACAGAGGAGTCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTTCGGTGGCCAAGTTCACATTGGCGCTCAGTAAAGGTTGGGTGGGATGAATCCACAGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCTCTTAGGCTTAAACGACCATGGCCTCCAGGACTTCCTTCATTCAACGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCACTACTATGGCTCCGTGACGCAGATAGAGGGCTTCAAACTCTTAATTTTCAAGGGATGGGTGTTAATCCCTGGATGCAGGCGAGGCTCGATCCGTCTATGATGAATTTGCAACCAGATATGTACCATGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCAAAACAGCATCCTGCTTCCTTACTTCAATTTCAGCCGCCACAGAATTTTCCCAATGGTTCATTTTCCAATGACGAAACATCTCACCTTCTCAACTTTCCTAAACCAAACTCTTGGGTTCCGGTTCAATCTTCAACAGCATGGCCCTCCAAGCGAGTTGCCTTGGATCCTCTCGTTTCTTCTGGAACATCTCATTATGTTCTGCCTCAAATGGAGCAACTTGGGCAGTCGCAAACTACCATGTCTCAAAATGCTATTACCTTGCCACCGTTTCCTGGTAGGGAGTGTGCTCTCGAAGGGAACACTGATCCACAAAACCATCTTTTGTTCGGTTTTAACATAGAACCCTCGTCACATCTAGTGTATAACGAGATGTCAAACCTTAAGGGTGTCAATAGCAACTGTGACTCATCAACCGTGCCTTTTCAATCTTCTACCTACCTGAATAACACAGGCGCCGATTCTTCATTGAATAATGGAATGACACACGGTGTTGGCGAGTCGGGATTCCTTCAAACTTCTGAAAATGGAGGTCAAGGAAACTCACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCTAACTACCCGGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGACGTTCTTCTCCTTGGCGATGGCCCGTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGAAACAATGGACTAGAGCTTCTAAACTCAGCTCCAACTCAGAGGCTCTCTAATGGCATCTGTGATGACTACACCGGCCGCGAGGACCCGAGAACTCTAAGCACAGGTTTAACATCTGTGGGGTCTTTAGACTACTGA 2070 0.4623 MHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGLKDDDFGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNLQPDMYHAMAAAALQDMRTLDPSKQHPASLLQFQPPQNFPNGSFSNDETSHLLNFPKPNSWVPVQSSTAWPSKRVALDPLVSSGTSHYVLPQMEQLGQSQTTMSQNAITLPPFPGRECALEGNTDPQNHLLFGFNIEPSSHLVYNEMSNLKGVNSNCDSSTVPFQSSTYLNNTGADSSLNNGMTHGVGESGFLQTSENGGQGNSPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDPRTLSTGLTSVGSLDY* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1817 689 SUPERFAMILY DNA-binding pseudobarrel domain 29 173 IPR015300 -
Psa7g1817 689 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Psa7g1817 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 392 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g1817 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 393 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g1817 689 SUPERFAMILY CAD & PB1 domains 552 631 - -
Psa7g1817 689 PANTHER AUXIN RESPONSE FACTOR 393 669 - -
Psa7g1817 689 PANTHER AUXIN RESPONSE FACTOR 1 392 - -
Psa7g1817 689 SMART B3_2 44 146 IPR003340 GO:0003677
Psa7g1817 689 Pfam Auxin response factor 170 253 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa7g1817 689 Gene3D - 42 145 IPR015300 -
Psa7g1817 689 Pfam B3 DNA binding domain 44 145 IPR003340 GO:0003677
Psa7g1817 689 Gene3D - 208 280 - -
Psa7g1817 689 Gene3D - 552 645 - -
Psa7g1817 689 CDD B3_DNA 43 144 IPR003340 GO:0003677
Psa7g1817 689 ProSiteProfiles PB1 domain profile. 556 640 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1817 Psa-Chr7 130953197 130958015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1817 392 689 B3 DNA Binding Superfamily AT1G30330 59.048 1.18e-98 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa7g1817 AUX_IAA 6.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1817 - - han:110911810 946.806