Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1808 ATGATGGATGCTGCAGCTGAGGTTGAAGAAAATATATTTGTTGTTAGTGATGCCAAGTTACATGGGCAAATGTGCAAGGCTCTTTCTATAGTATATTGCAAAGTATTGTCAGTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACCGGAATTCAGGCATTATGCTCATTGCATGTTGCCTTGGAGAAAGCCAAGAATGTTCTCCATCATTGCTCAGTGTGCAGTAAACTTTACCTGGCTGTAACTGGGGATTCCGTTCTCCTGAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGGCGGGTGGAAGATATTGTTCCACAATCCATTGGATATCAGGTTCAGGAGATTGTGAATGAATTTGCAAGTGTGGAATTTGCACTTGACCCCTTAGAGAAGCAAGTTGGTGATGATCTAATTGCATTGCTCCAGCAGGGCAAGAAGTTTGACGACGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCTAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAAGTTATAGACAAGGCTCGGGCTGAGGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTTCAGATGACAATGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTAATGAGGATGGTGTTCCTGTTTGTCATAGTCAGGCTTTTGGCAGACAGCTTTCAAAACTTAGCTCCTTTAGTTTCACGCCAAATAATAATATGGAGCCAGGGCAGATGGCTCTACCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCATCTTATGTATGATCCAGTTATTATTGCTTCGGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAATCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCCGAAGGCCCTCCTGAGTCTCTTGATCTTAACTACTGGAGATTGGTAATATCAGAGTCAGAGTCTGCAAATTCAAGATCTGTAAATAGTGTCAGCTCTTGCAAGCTGCAGGGTGTCAAAGTGGTTCCTTTAGAAGGGAGTTGTATCTCAAAGGAATATGGGGAAAATGAAGCTGAAAGTGTATCTGCGCAAGAGGAAGACACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACCGAGGACAACAATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTGAGGCTGTTGCTGAGGGAGGATGAAGAAGCTAGGATTCTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCGGCTTTACATGAAAGGAATTTGATGGCTCAGGAAAGCGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAATGACAGAAATAAGGAGATTATGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACTAGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCTTGCCTCGAAGAAGCCAAACCTATGATTGGCATGAGCCAGGCTGTACGGTTCCTAAGCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCATGATTCTCTCCACGCTCTCTATAATCTTTCTACTTTGCCCTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGCATAGCTATTTTGATAAATTTAGCTACTTCTCAAGATGGAAGGGAGGAAATGGTATCAACTCCTGGACTCATTAGTGCATTAGCTTCGATATTGGACACTGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGCCTCCTAATTTTGTGCAATAGAAGTGAGCAGTGTTCCGATATGGTCTTGCAAGAAGGAGTTATACCTGCGCTGGTATCAATATCAGTGAATGGGACCCCAAGAGGACAAGAAAAAGCTCAGAAACTCCTGATGCTGTTCCGACAGCAGCGACGAGATGAATCACCTGTTGAGACTCACGAGTGTCCTCCTGAAAGTAGTGATTTGTCTGTGCCTCCTGCTGAAATGAAACCTTTATGTAAGTCGATGACTAGAAGAAAGACAGGGAAAGGTTTTGGCTTTTTCTGGAGAAGCAAGAGCTATTCCGTGTACCAGTGTTGA 2304 0.4227 MMDAAAEVEENIFVVSDAKLHGQMCKALSIVYCKVLSVFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGYQVQEIVNEFASVEFALDPLEKQVGDDLIALLQQGKKFDDDSESYELESFHQAATRLGITSSRAALAERRALKKVIDKARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDNDSQGSGPCSPTVQGSNEDGVPVCHSQAFGRQLSKLSSFSFTPNNNMEPGQMALPPEELRCPISLHLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVISESESANSRSVNSVSSCKLQGVKVVPLEGSCISKEYGENEAESVSAQEEDTEQYLSFLKVLTEDNNWKRKYEVVEQLRLLLREDEEARILMGANGFVEALVQFLQSALHERNLMAQESGAMALFNLAVNNDRNKEIMLSAGVLSLLEEMISNTSSYGCATALYLNLSCLEEAKPMIGMSQAVRFLSQLLQSDYDIQYKHDSLHALYNLSTLPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAILINLATSQDGREEMVSTPGLISALASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFRQQRRDESPVETHECPPESSDLSVPPAEMKPLCKSMTRRKTGKGFGFFWRSKSYSVYQC* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1808 767 PANTHER U BOX DOMAIN-CONTAINING 2 759 - -
Psa7g1808 767 CDD RING-Ubox_PUB 286 328 IPR045210 -
Psa7g1808 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Psa7g1808 767 SMART arm_5 502 541 IPR000225 GO:0005515
Psa7g1808 767 SMART arm_5 457 501 IPR000225 GO:0005515
Psa7g1808 767 SMART arm_5 627 668 IPR000225 GO:0005515
Psa7g1808 767 SMART arm_5 542 583 IPR000225 GO:0005515
Psa7g1808 767 Gene3D - 416 604 IPR011989 -
Psa7g1808 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Psa7g1808 767 SUPERFAMILY RING/U-box 279 357 - -
Psa7g1808 767 Gene3D - 607 713 IPR011989 -
Psa7g1808 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Psa7g1808 767 SUPERFAMILY ARM repeat 430 710 IPR016024 -
Psa7g1808 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Psa7g1808 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Psa7g1808 767 Coils Coil 177 197 - -
Psa7g1808 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1808 Psa-Chr7 130556038 130561687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1808 2 766 U-box Gene Family AT1G24330 65.000 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1808 - - gmx:100794099 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1808 7 130556038 130561687 Psa7g1808 7 130556038 130561687 ECH