LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g1793	ATGGTTAAGTACTCAAGAGAGCCCGATAATCCCACCAAGTCCACCAAGGCAAGAGGTGCTGACCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCGTTTTCCATCAGGAAGATGCCATTGATCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCTATTCCATTCAGACGTTTCTGCCGTGGTGTTGGGAGGACAGCCCAGGCCAAGAGCAGACACTCCAATGGACAAGGAAGGTGGCCCGCCAAATCTGCAAAATTCATCCTTGATTTGCTTAAGAATGCAGAGAGCAACGCCGAAGTCAAAGGATTGGATGTTGATGCTCTATATATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACTTACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCCCCATGCCACATAGAGTTGGTACTATCTGAAAAGGAAGAACCTGTCAAGAAGGAGCCTGAGACCCAGTTGGCTTCTAGCAAGAAGAGGGCTTAA	522	0.4655	MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELVLSEKEEPVKKEPETQLASSKKRA*	174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g1793	173	PANTHER	BNAA09G27910D PROTEIN	1	171	-	-
	Psa7g1793	173	MobiDBLite	consensus disorder prediction	153	173	-	-
	Psa7g1793	173	CDD	Ribosomal_L22	16	151	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Psa7g1793	173	TIGRFAM	uL22_arch_euk: ribosomal protein uL22	4	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Psa7g1793	173	SUPERFAMILY	Ribosomal protein L22	1	154	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Psa7g1793	173	ProSitePatterns	Ribosomal protein L22 signature.	127	151	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Psa7g1793	173	PANTHER	60S RIBOSOMAL PROTEIN L17	1	171	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Psa7g1793	173	Pfam	Ribosomal protein L22p/L17e	17	152	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Psa7g1793	173	Gene3D	Ribosomal protein L22/L17	1	173	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Psa7g1793	173	Hamap	50S ribosomal protein L22 [rplV].	2	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g1793	Psa-Chr7	129522021	129527068	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g1793	1	173	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	87.861	6.73e-116	324

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g1793	K02880		-	gmx:100499784	322.013

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g2229	5	174405700	174408120	Psa7g1793	7	129522021	129527068	PCT