Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1779 ATGAAGTTGAATGCAAAATCTCTTTCTTCACGGTGGGAATGGGATAACCTATCCTTTTTCAATACAAAAGAAATTCAAAATTCAAAATCACAACCACCGAATCGGAGTATCGAATTAGATCGAGAAAACAATGTCGAGTTGTTCGATACGCCCAATGGAAGTGGTTGCTCTGGGTCTGAGTTAATTCATAATTCATGTTCAATTGGTTCATCATCAAATAGGGATAAGGATAATAGCAAAACATGTATATTTGCTTTTGAAAATTCCCATGATTTCAATGATAAAATAGAATTATCTAGAGAAGATCCAATGGAAAGTTCTAATGCACCGGAGCTTTCTTCTGTATCTGGTGAACCATTGCTCACTCTAAAACTCGGTAAACGGATGTACTTTGAGGATTTATGCCCAGAAAGTGATCCCAAAAACTTATCTTTTTTTGGGGATTCCATGTCAAATTTAAGTATTGGAAAGAAATGTAAGTCAATTGGTCGGAACTTACAATGTTCGCATTGTCAAGTTGAAGGTTGTGGCCTTGACCTTTCATCGGAGAAAGATTATTATCGCAAACATAGAGTTTGTGAAAGTCATTCAAAATCTCCTAAAGTGGTGATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTTTTTGAGTTCGATGAAAAAAAGAGAAGCTGTAGACGACGTCTTTCGCATCACAATGCAAAGCGCCGCAAACCTCGTCCGCTTGATATTGTCCAATCAAGTCAATCGGCTCTGTCTTCTTCACGATGTGATGGAGAGCAACAGATAAGTCCATTTTCGTATTCAAAGACTGCTACAAACTTGGCCTTGCAAAACATAGACAACAACATGCTCCTCCAAACAAAAGATTTTCTCTTGAAGCCTGCAAACGATAACGTTGATGCACCGAGTTCTGTCACCATGCTTTCTGACGATTCTAATGTCAATTTTACATCCAAAGTCATTGCAACCAAGAGTATCAATCCAGGTGTAGAAGATTTCATTACCTTTTCTGATACAAATGCAACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCATATGCGACTCAATCTATTTCTCTAGAACATTCTAATCGCACAAGCACTTGTTTTCAAGCCATAACACATGCAATGAGTCAGGGCACGCCGCTTGCTTCATCAGAATATATTAGTGAACATGATCAACATGTCAATTCCAGCGTGTGGATCTCAAACTCAAACTGTGAAGAAAGTATTCACTTTCAAGAATTTCAACTGTCGAGAGAACCTTATGAATCTGGTTTTCACCCGTTGGACTAA 1338 0.3879 MKLNAKSLSSRWEWDNLSFFNTKEIQNSKSQPPNRSIELDRENNVELFDTPNGSGCSGSELIHNSCSIGSSSNRDKDNSKTCIFAFENSHDFNDKIELSREDPMESSNAPELSSVSGEPLLTLKLGKRMYFEDLCPESDPKNLSFFGDSMSNLSIGKKCKSIGRNLQCSHCQVEGCGLDLSSEKDYYRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHALFEFDEKKRSCRRRLSHHNAKRRKPRPLDIVQSSQSALSSSRCDGEQQISPFSYSKTATNLALQNIDNNMLLQTKDFLLKPANDNVDAPSSVTMLSDDSNVNFTSKVIATKSINPGVEDFITFSDTNATQDFTCALSLLSTNPWDSYATQSISLEHSNRTSTCFQAITHAMSQGTPLASSEYISEHDQHVNSSVWISNSNCEESIHFQEFQLSREPYESGFHPLD* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1779 445 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Psa7g1779 445 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 442 IPR044817 GO:0003677
Psa7g1779 445 Gene3D - 163 232 IPR036893 GO:0003677|GO:0005634
Psa7g1779 445 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 442 - -
Psa7g1779 445 Pfam SBP domain 171 244 IPR004333 GO:0003677
Psa7g1779 445 SUPERFAMILY SBT domain 170 247 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1779 Psa-Chr7 128866950 128869950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1779 1 389 SBP-box Gene Family AT5G43270 36.816 1.70e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa7g1779 SBP 5.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1779 - - mtr:MTR_8g080670 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1779 7 128866950 128869950 Psa7g1779 7 128866950 128869950 ECH