Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g1620 | ATGCTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACTACAACAAAACATGATAGGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAAGTTGAGTCAGGAGCTATGAAAATGGAAGCTACCAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAGATATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAACCACCATTTGCCAAATCAGAAGAATGCCACCAAACGGCGACAGAAGACCAGTCAACTGTTTCTTCAAATGGATTGAAGGAAGAGAAACATGCATCATCACTTT | 529 | 0.397 | MLATMSHEIRSPLSGVVSMAEILTTTKHDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKMEATKFRPREVVRHVLQTAAASLQKMLTLEGDIADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKSEECHQTATEDQSTVSSNGLKEEKHASSL | 176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g1620 | 176 | PANTHER | HISTIDINE KINASE CYTOKININ RECEPTOR | 1 | 162 | - | - | |
| Psa7g1620 | 176 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 1 | 62 | IPR036097 | GO:0000155|GO:0007165 | |
| Psa7g1620 | 176 | ProSiteProfiles | Histidine kinase domain profile. | 4 | 137 | IPR005467 | - | |
| Psa7g1620 | 176 | SMART | HisKA_10 | 1 | 62 | IPR003661 | GO:0000155|GO:0007165 | |
| Psa7g1620 | 176 | MobiDBLite | consensus disorder prediction | 149 | 176 | - | - | |
| Psa7g1620 | 176 | MobiDBLite | consensus disorder prediction | 155 | 176 | - | - | |
| Psa7g1620 | 176 | Gene3D | - | 1 | 60 | - | - | |
| Psa7g1620 | 176 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 51 | 138 | IPR036890 | - | |
| Psa7g1620 | 176 | PANTHER | TWO-COMPONENT HISTIDINE PROTEIN KINASE | 1 | 162 | - | - | |
| Psa7g1620 | 176 | Pfam | His Kinase A (phospho-acceptor) domain | 1 | 62 | IPR003661 | GO:0000155|GO:0007165 | |
| Psa7g1620 | 176 | CDD | HisKA | 1 | 58 | IPR003661 | GO:0000155|GO:0007165 | |
| Psa7g1620 | 176 | Gene3D | - | 61 | 170 | IPR036890 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g1620 | Psa-Chr7 | 116019817 | 116020889 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g1620 | 1 | 169 | Histidine Kinase Gene Family | AT5G10720 | 75.148 | 9.68e-81 | 255 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g1620 | - | - | cam:101512841 | 315.849 |