Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1612 ATGGGGGGAAGAGGAGGAGCATGCAGAGCTTGGGAGGAAGACATTTACTGGAACCATTTTCAATTCATCTGTTTCACTCAATTTCTCCGCTCTGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTCTGACAATATAAAGAACTTGCCTGAAAGCGTGACGCTAAAAGGTCCTGGTGGAGTGCTGTGGAATATAGAGCTGACAACTAGAGACAATACCTTGTACTTCGCACACGGTTGGCAACAGTTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGGATCGTTGTTTGAGGTTTTAATCTTTGATGGCGAGAGTTTATGTGAGAAGGCGGCTTGTTATTTTGTTCGAAAATGTCAGCATGCTGCCAATACTGAACAAGGGGTTGGATGTTCTAGCAAGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAAACTCCTAATGGTGTTGATGAAGGTGTTTCGCCTGTGCAATCTTTTCATCTTAACAGTAACCGAGTGCCACTTGCTGTACCTATCGAAACTACTAATGGCAAGACTCCTGCTGTACCTATCGAAACTACTAATGGCCAGACTCCTGCTGTACCTATCGAAACTACTAATGGCAAGACTCCTGCTGTACCTATCGAAACTACTAATGGCAAGACTCCTGCTGAACCTATCGAAACTACTAATGGCAAGACTCCTGCTGAACCTATCGAAACTACTAATGGCAAGACTCCTGCTGAACCTATCGAAACTACTAATGGCAAGACTCCTGCTGAACCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTGTTGAAACTGCTTCTGCCGAGCAATTCATGTCTGATGCAGTCACTGATACTGAGCCAAAAGAGCCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGAGGCCTGTTTATGCCGATATGTCTGTCCCGAGTAAGAAGAGAGGAAGACCACCAAAAACCGCTAATTCTCATGAGGGGCCACCAAAAACCGCTAACTCTCACGAGGGAGCTCTAAATTCTGTGTCTGGTGCTGAACTTATCCCCAAGGTTTCTCCAAAGGCCTCTCCCAAGGTTGGATTGGGGACCAAGGAACTATATACTTCAAATAGAAGGCCTGTAACAAAAAATGAGATTGAAAATACTCTTCAGTTGGCCAAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGGCCTACGCATGTATACAAGAGATTCTTCGTGTCATTCCATAATAAGTGGATAATAAACCATCTTTCTCCGTCATCTCAAGATGTGATATTACGGATTGGTAAGAGTGAATGGCTTGGGAAATACTTGTATCATAAATCTCGTAACAATGGAGGACTTGCTGGTGGGTGGAAATACTTTGCGCTTGAAAATAACCTTGAAGAGTTTGATGTGTGTGTGTTTAAGCCCGCAGGTTATATGGACAAAACGTTGATCTTAGACGTGACCATTTTTAGAGTTGTTGAGGAGGTTACTCCTCTTACTGCGGTGAATTCTCCGGGAAAGAATATGTCAATTAAGAAAACACCAACCAGGGTGAATTCTCTGGGAAAGAAGAGGTCGATTAAGAAAACAACAACTGGGGTGAATTCTTCGCGAAAGAGAAGGTCAATTAAGAAAACACCAACCGAGGTGAATTCTCCGGGAAAGAAGAGTAAGAAAACACCAACTGGGGTGAATTCTCCGGGAAAGAAGAGGTCAATTAAGAACACACCAACCGGTGCTGTCCAAACAGAACTCGAGTCCTCTGAACCACTAGTAAAGAAGAGGGGAGTTAACATAACACTGACCAGTGCTGTCCAAACAGAACTTGACTCCATCGAAGGTGTGTAA 1887 0.433 MGGRGGACRAWEEDIYWNHFQFICFTQFLRSDFDQQLALPKTFSDNIKNLPESVTLKGPGGVLWNIELTTRDNTLYFAHGWQQFVKEHSLKENDFLVFKYNGGSLFEVLIFDGESLCEKAACYFVRKCQHAANTEQGVGCSSKKRDSDNSVEEVKTPNGVDEGVSPVQSFHLNSNRVPLAVPIETTNGKTPAVPIETTNGQTPAVPIETTNGKTPAVPIETTNGKTPAEPIETTNGKTPAEPIETTNGKTPAEPIETTNGKTPAEPIETTNGKTSNAGVETASAEQFMSDAVTDTEPKEPKTVPSQTTGKRTRRRPVYADMSVPSKKRGRPPKTANSHEGPPKTANSHEGALNSVSGAELIPKVSPKASPKVGLGTKELYTSNRRPVTKNEIENTLQLAKATCAEDTLLVTMRPTHVYKRFFVSFHNKWIINHLSPSSQDVILRIGKSEWLGKYLYHKSRNNGGLAGGWKYFALENNLEEFDVCVFKPAGYMDKTLILDVTIFRVVEEVTPLTAVNSPGKNMSIKKTPTRVNSLGKKRSIKKTTTGVNSSRKRRSIKKTPTEVNSPGKKSKKTPTGVNSPGKKRSIKNTPTGAVQTELESSEPLVKKRGVNITLTSAVQTELDSIEGV* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1612 628 MobiDBLite consensus disorder prediction 225 278 - -
Psa7g1612 628 SMART B3_2 408 506 IPR003340 GO:0003677
Psa7g1612 628 SMART B3_2 24 114 IPR003340 GO:0003677
Psa7g1612 628 SUPERFAMILY DNA-binding pseudobarrel domain 22 112 IPR015300 -
Psa7g1612 628 MobiDBLite consensus disorder prediction 135 158 - -
Psa7g1612 628 CDD B3_DNA 22 112 IPR003340 GO:0003677
Psa7g1612 628 Gene3D - 387 509 IPR015300 -
Psa7g1612 628 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 182 - -
Psa7g1612 628 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 375 514 - -
Psa7g1612 628 Pfam B3 DNA binding domain 30 112 IPR003340 GO:0003677
Psa7g1612 628 Pfam B3 DNA binding domain 410 498 IPR003340 GO:0003677
Psa7g1612 628 MobiDBLite consensus disorder prediction 560 598 - -
Psa7g1612 628 MobiDBLite consensus disorder prediction 520 602 - -
Psa7g1612 628 SUPERFAMILY DNA-binding pseudobarrel domain 409 496 IPR015300 -
Psa7g1612 628 Gene3D - 18 117 IPR015300 -
Psa7g1612 628 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 182 IPR044837 -
Psa7g1612 628 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 375 514 IPR044837 -
Psa7g1612 628 ProSiteProfiles B3 DNA-binding domain profile. 22 114 IPR003340 GO:0003677
Psa7g1612 628 CDD B3_DNA 411 504 IPR003340 GO:0003677
Psa7g1612 628 MobiDBLite consensus disorder prediction 290 349 - -
Psa7g1612 628 ProSiteProfiles B3 DNA-binding domain profile. 449 506 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1612 Psa-Chr7 115121830 115124994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1612 361 504 REM Transcription Factor Family AT4G33280 31.250 1.67e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa7g1612 B3 1.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1612 - - adu:107495813 389.423