Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1587 ATGGATCAGGCAACAAGCAAAGGCAGTAGTGAAATGTTGGATCATGCTGATGAAGGGGTTAATGAGAATTCGAGTCATTTAGTTGAAGGAGTTGCAATTGATGCAGGAGCTGGACATAGCTTGGGTGGTAGGGCTAGTGTATGCGATGATCTTGGATTGAATGAGGAGCTAAAGGAGAGAGCTTTAGAAGTTAAGGGTCAGAATGAGAATGTTGGTGGTGATCCTGGAAAAATCGACGATGATTTGCGCGGGTTTGATCAAGGGACTAGTTATAATTCAAGTGATTTGGTTAATGGGGAAGCACTTGAGACCCGTGTTGTAATAGATTCTTCTGCTCAGGTTGAGTCTGTCGATGGAGATAGCCGAAAATTAGAAGCTAAAACTAATGAATCAAGGTTGAACAAGCTATCGATTAAAGCACTGAAAGGTGTGTCTGAGACTGATAAAAATTCGTGTGTGATTGATGTGAATTGTGGCAACGGCAAAGATTTTACCGAGAATTTGGATGGTGAAACGATTTGTAGGATTTGCCATCTGGCATCTGGGCAACCATTAGAAGAAACTGCTGTTGGAACTCCAAATAGTGCTGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGACGAGTTAGGAATTGCGCACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGATATGCGAAATATGCGGTGAGACTGCAAAGAATGTTCCCGATGTTATTAATAACGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGACAGTGGCAGCACTAGCAACTCACCGCGCGGGTTGGTTGGATGCTGGCGCGGGCAACCGTTCTGCAACTTCTTGATGGCGTGCCTGGTAATAGGTTTTGTTCTACCATGGTTCTTTCGTGTAAAAATGTTCTAG 918 0.4303 MDQATSKGSSEMLDHADEGVNENSSHLVEGVAIDAGAGHSLGGRASVCDDLGLNEELKERALEVKGQNENVGGDPGKIDDDLRGFDQGTSYNSSDLVNGEALETRVVIDSSAQVESVDGDSRKLEAKTNESRLNKLSIKALKGVSETDKNSCVIDVNCGNGKDFTENLDGETICRICHLASGQPLEETAVGTPNSADDKTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRICEICGETAKNVPDVINNGFMEEWCESGFIDSGSTSNSPRGLVGCWRGQPFCNFLMACLVIGFVLPWFFRVKMF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1587 305 ProSiteProfiles Zinc finger RING-CH-type profile. 166 243 IPR011016 GO:0008270
Psa7g1587 305 Pfam RING-variant domain 194 236 IPR011016 GO:0008270
Psa7g1587 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 245 IPR013083 -
Psa7g1587 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 305 - -
Psa7g1587 305 PANTHER ZINC FINGER, RING-CH-TYPE 1 305 - -
Psa7g1587 305 SUPERFAMILY RING/U-box 171 239 - -
Psa7g1587 305 SMART ringv_2 173 237 IPR011016 GO:0008270
Psa7g1587 305 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1587 Psa-Chr7 111964726 111967050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1587 154 304 C3H Transcription Factor Family AT5G05830 37.419 1.92e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1587 - - gmx:100791129 410.223