Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1563 ATGGATGAGGCACAGGGAAGTTCAAGTTTACCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCTCGGATCCTATTGTTTCTTGGAGTATGAGTAACAAAAGTTTCGTCGTGTGGAATCCCCCTGAATTTGCGAGGGTTTTACTCCCGAGATTCTTTAAGCATAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGGTTTAGGAAAGTTGATCCAGAACAATGGGAGTTTGCCAATGATGATTTTGTAAAGGGGCAACCGCATCTTATGAAGAATATCCATAGACGGAAGCCGGTTCATAGCCATTCTCTGCATAATCTTCAAGCACAAGCCCCGTTATCAGAGTCTGAAAGGCAGAGTTTGAACGATGAAATAGAGAAACTGAAACACGATAGAGAACAGCTTCTGATGGAGATAAATAGATACCAACATGAGTGGCAAACATATGAGATCCAAATACATTGCTCAAAAGATCGGTTGGAAAAGATAGAACAAAAGCAACAAAAGATGTTGTCTTCTGTTTCTCAAGTACTGCAGAAACCTGCGGTTGCTGTGAATCTCTTGCCACTGACGGAAACGATGGATAGAAAACGAAGGTTGCCGGCGAGAAGTGGCCGTGTTAATGATGAAGCTAGTGAGGAAGATGGTATGGAAACTTCTGTAGCTTTGCCCAGAGAAATTGCAGAGGGTAACACTCTTTTGACATTAAACTCTGAGAAATTGGATCAACTTGAGTCATCCGTGACATTTTGGGAAACTGTTGCAAACGAAATCGGCGACAACTTCGTTCACTCTCACTCAGACATTGATTTAGATGAACCTACAAGCTGTGCTGATAGTTTGTCTATATCTTGTCGGCAACTAGAAGCTGAAATTCGATCCAAGTCGCCTGAAATTGACATGAACTCTGAACCAGCTGCTCCTCCTCCTGAGACTGTTGCATTAAAAGAACAGCCTGTAGGAATCACCACTGCCGCAACTGGGGTTAATGATGTATTTTGGGAACAGTTCTTGACAGAGGATCCTGGTGCGGCAGAAGCACAGGAAGTACAATCAGAAAGAAAGGATAATAATAGCCGAAAAAATGAAGGAAAACCTAGTGGTCACGGAAGATTTTGGTGGAATATGGGGAAAGCAAATACTCTTCCGGAACAGATGGGGAATGTTGGTCAAGTAGAGAAAATTCAGTAG 1209 0.4243 MDEAQGSSSLPPFLAKTYEMVDDPSSDPIVSWSMSNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVKGQPHLMKNIHRRKPVHSHSLHNLQAQAPLSESERQSLNDEIEKLKHDREQLLMEINRYQHEWQTYEIQIHCSKDRLEKIEQKQQKMLSSVSQVLQKPAVAVNLLPLTETMDRKRRLPARSGRVNDEASEEDGMETSVALPREIAEGNTLLTLNSEKLDQLESSVTFWETVANEIGDNFVHSHSDIDLDEPTSCADSLSISCRQLEAEIRSKSPEIDMNSEPAAPPPETVALKEQPVGITTAATGVNDVFWEQFLTEDPGAAEAQEVQSERKDNNSRKNEGKPSGHGRFWWNMGKANTLPEQMGNVGQVEKIQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1563 402 Gene3D - 5 103 IPR036388 -
Psa7g1563 402 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g1563 402 Coils Coil 110 151 - -
Psa7g1563 402 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 382 - -
Psa7g1563 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 382 IPR027725 -
Psa7g1563 402 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g1563 402 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g1563 402 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g1563 402 MobiDBLite consensus disorder prediction 353 373 - -
Psa7g1563 402 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Psa7g1563 402 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g1563 402 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa7g1563 402 MobiDBLite consensus disorder prediction 351 402 - -
Psa7g1563 402 SUPERFAMILY Tropomyosin 97 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1563 Psa-Chr7 109760672 109765634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1563 1 400 HSF AT4G18880 49.635 2.05e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa7g1563 HSF_DNA-bind 6.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1563 K09419 - gmx:100798004 625.165