Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1556 ATGGCTAATGATAATTCAGCAAGAGTTGAAACTAATGATATTGAAAACAATCATATTGTTTTAGATGTAAACAAAGATTCCTCCCAAGAATCTCAAAACTCCTATGTTCCTTTCTTGCAAAAGTTAATAGCAGAGGTTGTGGGAACATATTTCTTGATATTTGCAGGATGTGCTTCAATTATAGTGAACAAAAACCACGACAACGTTGTCACACTTCCTGGGATCGCAATTGTTTGGGGACTCACTTTGTTGGTCTTGATTTACTCTCTTGGTCATATCTCTGGAGCTCATTTCAATCCTGCTGTTACCATTGCTTTTGCCACCACAAGGAGGTTTCCATTGATACAGGTACCAGCTTATATACTGGCTCAGCTCCTGGGGGGTACACTAGCAAGTGGGACTCTAAAACTAATATTCAGTGGCACACATGATCAGTTCTCAGGAACACTTGCAACTGGTTCTAACTTTCAAGCTTTTGCTCTTGAATTCATAGTCACATTTCACCTTATGTTTACAATTTCAGCAGTCGCGACCGATAATAGAGCGATTGGCGAGTTGGCTGGAATTGCAGTTGGATCTACATTATTGCTTAATGTCTTGATTGCAGGGCCGATAACCGGAGCATCAATGAACCCGGTTAGAAGTCTAGGACCTGCTTTTGTACATAATGAATATAGAGGAATATGGATATTTATAATTTCGCCGATTTTGGGAGCGGTGGCCGGAGCATGGGTCTACAACCTTGTTAGGCACACCAACAAGCCATTGCGTGAGATCACCAAGAGTGCATCCTTCCTCAAAGAAACAAAGCGTGGGGGAACCAAATAA 828 0.4143 MANDNSARVETNDIENNHIVLDVNKDSSQESQNSYVPFLQKLIAEVVGTYFLIFAGCASIIVNKNHDNVVTLPGIAIVWGLTLLVLIYSLGHISGAHFNPAVTIAFATTRRFPLIQVPAYILAQLLGGTLASGTLKLIFSGTHDQFSGTLATGSNFQAFALEFIVTFHLMFTISAVATDNRAIGELAGIAVGSTLLLNVLIAGPITGASMNPVRSLGPAFVHNEYRGIWIFIISPILGAVAGAWVYNLVRHTNKPLREITKSASFLKETKRGGTK* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1556 275 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 Gene3D Glycerol uptake facilitator protein. 1 260 IPR023271 -
Psa7g1556 275 SUPERFAMILY Aquaporin-like 36 259 IPR023271 -
Psa7g1556 275 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Psa7g1556 275 PANTHER NODULIN-26 3 269 - -
Psa7g1556 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1556 275 PANTHER AQUAPORIN NIP2-1 3 269 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1556 Psa-Chr7 109420633 109422997 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1556 1 271 Major Intrinsic Protein MIP AT5G37820 53.875 1.61e-101 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1556 K09874 - gmx:100813448 395.586