Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1554 ATGGCTAATGATAATTCACCAACACTTGAAACAAGTGATAATATTGTTTTAGATGTAGTAAACAAAGAGTCCCCCCAAACATCTGAAGATTCCTCCGTCCCTTTTTTGCAAAAGTTAATAGCAGAGGTTGTGGGAACATATTTCTTGATATTTGCAGGATGTGCTTCAATTATAGTGAACAAAAACCACGACAACGCTGTCACGCTTCCTGGAATCGCAATTGTTTGGGGACTCGCTTTGGTTGTTTTGATTTACTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGGCCGTCACCATTGCTTTTGCTTCCACCAGAAGTTTTCCATTGTTACAGGTACCAGCTTATATTACAGCTCAGGTTTTGGGAGCAACCATAGCAAGTGGAACCCTAAAACTAATATTCAGTGGCACACATGATCAGTTTTCAGGAACACTTCCATCTGGATCTAACCTTCAAACTTTTGTGTTTGAATTCATAATCACGTTTTATCTTATGTTTATCATTTGCGGAGTTGCCACCGATAGCCGGGCGATTGGTGAGTTGGCTGGAATTGCGATTGGATCTACATTATTGCTTAATGTCATTATTTCAGGACCTATAACTGGAGCATCAATGAACCCGGTTAGAAGTTTAGGACCTGCTTTTATGCACAGTGAATATAGAGGAATATGGATATACTTGATATCGCCGGTTTTGGGAGCTGTGGCGGGAGCATGGGTCTACAACCTTGTTAGGTATACTAACAAGCCATTGCGTGAAATAGTTAAGAGTGCATCCTTCCTCAAAGAAGCAAAGCGTGGGGAGGCGAAATAG 819 0.4164 MANDNSPTLETSDNIVLDVVNKESPQTSEDSSVPFLQKLIAEVVGTYFLIFAGCASIIVNKNHDNAVTLPGIAIVWGLALVVLIYSLGHISGAHFNPAVTIAFASTRSFPLLQVPAYITAQVLGATIASGTLKLIFSGTHDQFSGTLPSGSNLQTFVFEFIITFYLMFIICGVATDSRAIGELAGIAIGSTLLLNVIISGPITGASMNPVRSLGPAFMHSEYRGIWIYLISPVLGAVAGAWVYNLVRYTNKPLREIVKSASFLKEAKRGEAK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1554 272 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 SUPERFAMILY Aquaporin-like 32 256 IPR023271 -
Psa7g1554 272 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Psa7g1554 272 PANTHER AQUAPORIN NIP2-1 3 267 IPR034294 -
Psa7g1554 272 TIGRFAM MIP: MIP family channel proteins 41 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 CDD MIP 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 PANTHER NODULIN-26 3 267 - -
Psa7g1554 272 Pfam Major intrinsic protein 31 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1554 272 Gene3D Glycerol uptake facilitator protein. 5 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1554 Psa-Chr7 109309030 109310428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1554 23 270 Major Intrinsic Protein MIP AT5G37820 56.048 4.22e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1554 K09874 - gmx:100813448 399.053