Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1553 ATGGGTGACAATTCAGGATGCAATGAAACCAATGAAATTGTTGTAAACGTAAACAAAGATGTCTCTAACATAACTCAAGAAGATTCAACCGCACATGCCACTGCTTCTCTCTTGCAAAAGTTGGTTGCTGAAGTGGTAGGAACCTATTTCTTAATATTTGCTGGTTGTGCTGCTGTGGCGGTGAACAAGAACAATGACAACGTTGTCACACTTCCTGGAATTTCAATTGTTTGGGGACTTGCTGTCATGGTGCTTGTTTACTCTCTTGGTCATATCTCCGGTGCTCATTTCAATCCGGCAGTTACGATCGCTTTTGCTACCACCAGAAGATTTCCATTGAAACAGGTACCAGCTTATATTGCAGCTCAAGTCTTTGGTTCCACACTTGCAAGTGGAACACTTAGACTTTTATTTAGTGGCAAACATGATCAGTTTGTAGGAACACTTGCAGCTGGATCAAATCTGCAAGCTTTTGTGATGGAATTCATAATCACATTTTATCTTATGTTTATCATATCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAATTGGCTGGGATTGCCGTTGGATCTACTGTACTATTGAATGTGATGTTTGCAGGGCCAATCACGGGAGCGTCGATGAATCCGGCAAGAAGTATAGGGCCGGCTTTTGTGCACAATGAATATCGAGGAATATGGATATACATGATTTCTCCGATTCTAGGGGCTGTATCTGGTGCATGGGTTTATAATGTCATTAGGTACACTGATAAACCAGTTCGTGAGATAACCAAAAGTGGATCTTTTCTGAAAGGAGCAAAGCCATAG 813 0.4182 MGDNSGCNETNEIVVNVNKDVSNITQEDSTAHATASLLQKLVAEVVGTYFLIFAGCAAVAVNKNNDNVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPLKQVPAYIAAQVFGSTLASGTLRLLFSGKHDQFVGTLAAGSNLQAFVMEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHNEYRGIWIYMISPILGAVSGAWVYNVIRYTDKPVREITKSGSFLKGAKP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1553 270 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 SUPERFAMILY Aquaporin-like 35 259 IPR023271 -
Psa7g1553 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Psa7g1553 270 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g1553 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Psa7g1553 270 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Psa7g1553 270 ProSitePatterns MIP family signature. 96 104 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1553 Psa-Chr7 109270462 109272711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1553 30 270 Major Intrinsic Protein MIP AT5G37810 60.166 1.68e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1553 K09874 - gmx:100798526 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1553 7 109270462 109272711 Psa7g1553 7 109270462 109272711 ECH