Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1540 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTTGAGTCTTCCGACACCATCGACAACGTGAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTCTCGCCGACTACAACATCCAGAAGGAATCAAGAGAGAAGCGTAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCATAAGCACAGGAAGGTGAAGCTTGCGGTTCTCCAGTTCTACAAGGTGGATGATTCTGGAAAGGTGCAGAGGCTGAGGAAGGAGTGCCCTAATGCGGAGTGTGGTGCAGGGACTTTCATGGCGAATCATTTTGATCGCCATTACTGTGGTAAGTGTGGGCTTACCTATGTTTACCAGAAGGCTGAAGCTTGA 435 0.5034 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESREKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1540 144 Pfam Ubiquitin family 3 65 IPR000626 GO:0005515
Psa7g1540 144 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 135 - -
Psa7g1540 144 SMART Ribosomal_S27_2 91 136 IPR002906 GO:0003735|GO:0005840|GO:0006412
Psa7g1540 144 Gene3D - 1 66 - -
Psa7g1540 144 ProSiteProfiles Ubiquitin domain profile. 1 65 IPR000626 GO:0005515
Psa7g1540 144 Pfam Ribosomal protein S27a 91 136 IPR002906 GO:0003735|GO:0005840|GO:0006412
Psa7g1540 144 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa7g1540 144 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa7g1540 144 PRINTS Ubiquitin signature 53 74 IPR019956 -
Psa7g1540 144 SUPERFAMILY Ubiquitin-like 1 65 IPR029071 -
Psa7g1540 144 Gene3D - 68 144 IPR038582 -
Psa7g1540 144 SUPERFAMILY Zn-binding ribosomal proteins 89 142 IPR011332 GO:0006412
Psa7g1540 144 PANTHER UBIQUITIN 1 135 - -
Psa7g1540 144 SMART ubq_7 1 78 IPR000626 GO:0005515
Psa7g1540 144 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1540 Psa-Chr7 108575660 108576310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1540 1 143 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 83.117 2.03e-79 229