Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1535 ATGCCTCGGAAAGTAAATTATGGAATCGATTACTACGACGATGACTACGAGGACTATGATGACTATGATTATGATGTTGAAGCTGAAAACTATGGAGAAGGACCCGACGCAAAGCAAGAGACCATTAGGCCGGGAGTTTGGCAATGCCCTATTTGCACGTATGACAACGATGAGAGTATGACTTCGTGCGATATTTGTGGTGTTGTACGTCATCCCTTGGTTAACAATGGAACTTCCAACAGTAACAAAACAGTTGAAGATATAAACAAAACTCCTGGAGCGTCCAAGCTGGCCAGGTCTATTTTTCAATCATTACCACACCAGAGTTCCAAAGAGGTTGTATTATTTCCAACGCAAGGTGTTGGTTTTTGGACAGATAGCAGTAACATCCACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGACTTTTAATACTCAAAGCCCTCCCTCTTTAAATATAGATCCTTTCAAGTTTGACGTTCCATCTCCGGATGATGTGGTTCATACTGGCCTACATTCTTCAAAAGTGGGTTTGAAAGACAAAGTTAAAAATGCTAAAGATTCACAGTTTTCACAAAACAGCAGACAGAAGAGTGAACTTGCTGTAGAATTCAATACTGAAAGTGCAGACAACTCATCATCCTTAATACAAAAGAGCAAGCAGGGTAGTGCGGCTCAAAACAAGCTTTCCAAAAATGTAGAAACTGATCTAGAAACAATTGGTGAAACTTTGAACAGTTTATCAACATTTTTGCCAAAGGACAAAGGGGATAATGCGAAAAAAATAAATTCTTCAAAAAATGGTACAAATGGTATCCAATCAAGCAAAGAATACTCCAGTCGTTCGTCTACACTGCCCAAAGTCGAAGAAAGTGACAAGCTTAGTTTGTCTTCTAACAAAGATGGAAATTCTGAAAGTGCTTCCAGCAGTTTTAACCACACAGTTCTTGATGTAAAATCTGGAAATTTTGATAAAACTACTTCTAAGGCACCTCATCAACAAGTTTCTTACACGCCAGAAAAGTGGATGCTTCCTCAACATTCTGAAGATACATTGACTCAGTTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCTGGCAGGTTATTACACCTATTGGGACGAATTTCCAAGAAAGAAATGCACAAGAATGAAAAAGAGGCCAAGTTACAGGGCAAGGGATCCTTCGCTTATGCTTGGGCACTTGATGAAAGTTCAGAAGAAAGGGAACGGGGAATAACCATGACAGTGGCTGTGGCATATTTCGACACTACGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGACTTCATCCCAAACATGATTTCTGGTGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCATTTGGTGCATTTGAAGCTGGTATGGATGGTAGTAAAGGACAAACAAAAGAGCATGCACAGCTTATTAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTGAATAAGATGGATGCTGTGGCATACTCCAAAGACCGATTTGATTTTATAAGACATCAGCTGGGAATTTTTCTTCGCTCATGTGGGTTCAAAGATTCTTCTCTCTTATGGATTCCCCTGAGTGCCATGGAAAATCAAAATCTGGTAGCAGCCCCTTCTGATGCTCGTTTCAAAAACTGGTATACTGGATCTTATCTGTTAGATGCAGTTGACTCACTACAACCTCCTACTAGAGAATTCGCCAAACCTCTGCTAATGCCAATATGTGATGCCATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAATGGAACAAAGGTACTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGTGACTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGTGACTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATGTATTGGCTGGAGGTGTATTATGCCATCCCGACTTTCCTGTTGCTGTTGCAAAGCATTTAGAGTTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTGGTTGGCGCTCAGTTAGAGTTTCATATTCATCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCGATACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTCTGAATGAGCCAGTCTGTGTGGTAGAGTTTTCTAGATGTAAAGCGCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATAATTGAAGAACAAGGTCCCTGCTCTTGA 2487 0.4109 MPRKVNYGIDYYDDDYEDYDDYDYDVEAENYGEGPDAKQETIRPGVWQCPICTYDNDESMTSCDICGVVRHPLVNNGTSNSNKTVEDINKTPGASKLARSIFQSLPHQSSKEVVLFPTQGVGFWTDSSNIHKLENVQGEFHEIHKTFNTQSPPSLNIDPFKFDVPSPDDVVHTGLHSSKVGLKDKVKNAKDSQFSQNSRQKSELAVEFNTESADNSSSLIQKSKQGSAAQNKLSKNVETDLETIGETLNSLSTFLPKDKGDNAKKINSSKNGTNGIQSSKEYSSRSSTLPKVEESDKLSLSSNKDGNSESASSSFNHTVLDVKSGNFDKTTSKAPHQQVSYTPEKWMLPQHSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTTKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASFGAFEAGMDGSKGQTKEHAQLIRSFGVDHVIVAVNKMDAVAYSKDRFDFIRHQLGIFLRSCGFKDSSLLWIPLSAMENQNLVAAPSDARFKNWYTGSYLLDAVDSLQPPTREFAKPLLMPICDAIKSTAQGQVSACGKLEAGALRNGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLHGVDGSHPSDVVGTVRTLERDSNACSVARAGDNVAVTLHGVDGSHVLAGGVLCHPDFPVAVAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSRILSILDPKTGKVTKKSPRCLTSKQSAVIEVILNEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRIIEEQGPCS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1535 828 ProSiteProfiles Zinc finger RanBP2 type profile. 43 72 IPR001876 -
Psa7g1535 828 MobiDBLite consensus disorder prediction 211 233 - -
Psa7g1535 828 SUPERFAMILY Translation proteins 585 657 IPR009000 -
Psa7g1535 828 MobiDBLite consensus disorder prediction 266 317 - -
Psa7g1535 828 Gene3D - 40 85 - -
Psa7g1535 828 PANTHER TRANSLATION FACTOR 662 823 - -
Psa7g1535 828 PANTHER TRANSLATION FACTOR 49 661 - -
Psa7g1535 828 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 717 821 IPR009001 -
Psa7g1535 828 Gene3D - 347 580 IPR027417 -
Psa7g1535 828 ProSitePatterns Zinc finger RanBP2-type signature. 47 66 IPR001876 -
Psa7g1535 828 Gene3D Translation factors 715 825 - -
Psa7g1535 828 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 356 587 IPR000795 GO:0003924|GO:0005525
Psa7g1535 828 MobiDBLite consensus disorder prediction 262 317 - -
Psa7g1535 828 Pfam Elongation factor Tu GTP binding domain 359 575 IPR000795 GO:0003924|GO:0005525
Psa7g1535 828 SMART zf_4 45 69 IPR001876 -
Psa7g1535 828 CDD HBS1_C_III 712 820 - -
Psa7g1535 828 SUPERFAMILY Ran binding protein zinc finger-like 45 70 IPR036443 -
Psa7g1535 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 590 IPR027417 -
Psa7g1535 828 SUPERFAMILY Translation proteins 662 745 IPR009000 -
Psa7g1535 828 Gene3D Translation factors 663 711 - -
Psa7g1535 828 Gene3D Translation factors 581 662 - -
Psa7g1535 828 PANTHER OS04G0595300 PROTEIN 49 661 - -
Psa7g1535 828 PANTHER OS04G0595300 PROTEIN 662 823 - -
Psa7g1535 828 CDD EF1_alpha 360 579 - -
Psa7g1535 828 Pfam Elongation factor Tu C-terminal domain 716 820 IPR004160 -
Psa7g1535 828 PRINTS GTP-binding elongation factor signature 360 373 IPR000795 GO:0003924|GO:0005525
Psa7g1535 828 PRINTS GTP-binding elongation factor signature 419 427 IPR000795 GO:0003924|GO:0005525
Psa7g1535 828 PRINTS GTP-binding elongation factor signature 439 449 IPR000795 GO:0003924|GO:0005525
Psa7g1535 828 PRINTS GTP-binding elongation factor signature 455 466 IPR000795 GO:0003924|GO:0005525
Psa7g1535 828 PRINTS GTP-binding elongation factor signature 500 509 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1535 Psa-Chr7 107952181 107960907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1535 156 823 Eukaryotic Initiation Factors Gene Family AT5G10630 56.716 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1535 K14416 - gmx:100801724 1202.58