Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1533 ATGAGTTTTCCAAATGAATCCATGCCTGATTCTCCTCAGAGAAAGATTGGAAGGGGAAAGATTGAGATCAAGAGGATTGAAAACACAACAAATCGCCAAGTTACCTTCTGCAAACGTAGAAATGGCTTGCTTAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAAGTTGCTCTTATAGTCTTTTCGACTCGTGGCCGTCTCTATGAATATGCAAATAACAGTGTGAAAGCTTCTATTGAGAGGTATAAGAAAGCATGTTCTGATACTTCTGGTGCTAAATCAGCTTCTGAGACTAATGCTCAGTATTATCAGCAAGAAGCCGCGAAACTGCGAGTGCAAATCAGTAATTTGCAGAATCATAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAACGGTAAGGAACTCAGAAACCTCGAGAGTAAATTAGAAAAAGGAATTAGCCGAATTCGCTCCAAGAAGAATGAAATGCTATTTGCAGAAATTGAGTACATGCAGAAAAGGATCTCAGAAAATGATCAGAGGAACAACCATAATGTTAATGTGTTGCATGGAGGCACAAACTTCGAGTGCATCCAACCTCAGCAGCAATTCGACTCTCGCAGTTACTTCCAAGTGAATGAATTACAACCTAATAATCAGTATGCCAGGCAGGACCAGATGTCTCTTCAATTTGTCTGA 690 0.4014 MSFPNESMPDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDTSGAKSASETNAQYYQQEAAKLRVQISNLQNHNRQMMGEALSNMNGKELRNLESKLEKGISRIRSKKNEMLFAEIEYMQKRISENDQRNNHNVNVLHGGTNFECIQPQQQFDSRSYFQVNELQPNNQYARQDQMSLQFV* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1533 229 ProSiteProfiles K-box domain profile. 102 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g1533 229 CDD MADS_MEF2_like 17 90 IPR033896 GO:0000977|GO:0045944
Psa7g1533 229 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 Coils Coil 102 129 - -
Psa7g1533 229 Pfam K-box region 98 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa7g1533 229 Coils Coil 139 159 - -
Psa7g1533 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 Gene3D - 28 99 IPR036879 GO:0003677|GO:0046983
Psa7g1533 229 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Psa7g1533 229 PANTHER AGAMOUSB 10 223 - -
Psa7g1533 229 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Psa7g1533 229 PANTHER MADS BOX PROTEIN 10 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1533 Psa-Chr7 107071077 107075056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1533 14 229 MADS-box Gene Family AT2G42830 61.277 8.81e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa7g1533 K-box 6.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1533 K09264 - gmx:100790650 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1533 7 107071077 107075056 Psa7g1533 7 107071077 107075056 ECH
Psa7g1533 7 107071077 107075056 Psa1g4414 1 344531640 344534335 PCT