Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1403 ATGTCTCACTTTAATTGTGGAGGATGTAGGACATTGCTAATGTACACACGTGGAGCTACGAGTGTCAGATGTTCTTGTTGTCACACCGTAAACCTTGCTCCAGTATCTAATCAAGTCGCCCATGTCCCTTGCGCTAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATATAACTAATATCAATATGTCCAACGGAAGGGTTCCAGTTCCTGCTAATAGACCTCAGGGGACAACCAACTTGGGAACATTACCTTCTACTTCAACATCAATGCCGCAATCTCAGGGCCAAACTGTGGTGGTAGAAAATCCAATGTCTGTTGATTCGAGTGGAAAATTGGTGAGCAATGTTGTTGTCGGCGTTACAACAGATAAGAAATAA 411 0.4355 MSHFNCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCANCRTTLMYPYGAPSVKCAVCHYITNINMSNGRVPVPANRPQGTTNLGTLPSTSTSMPQSQGQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1403 136 MobiDBLite consensus disorder prediction 84 108 - -
Psa7g1403 136 PANTHER PROTEIN LSD1 1 136 IPR040319 -
Psa7g1403 136 Pfam LSD1 zinc finger 6 30 IPR005735 -
Psa7g1403 136 Pfam LSD1 zinc finger 44 68 IPR005735 -
Psa7g1403 136 PANTHER PROTEIN LSD1 1 136 - -
Psa7g1403 136 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 3 32 IPR005735 -
Psa7g1403 136 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 41 70 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1403 Psa-Chr7 100824883 100829684 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Psa7g1403 zf-LSD1 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1403 - - mtr:MTR_8g089310 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1403 7 100824883 100829684 Psa7g1403 7 100824883 100829684 ECH