Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1334 ATGCTTTTTCATCTGAGAAATCTGCTTCATCTCTATCAATGCAATGATAGCCCAAATCCTTCTCCTCAACAACCACCTTCCTACTACCAAACCGATCATCGTATCCATAATATCCACACTCTTCATATCGCTTTGATTGGCATGGCTTGCTTGGTTACCACGGTTATGCTTCTTTTAACCTTAGCCATATTCCTAAGGAGACATAACCATGGAGTTAACGGTGGTAGAAGAAACATGCCTATATTGTTCGATGTCCATGGTTATAGAGATTCTACTAGTTCAGATGATGGTAACCATGGTGACGATGATGATGAGAGGATTATTGATCACCCCGTATGGTTCATCCGAACTATAGGCCTTCAACAATCTGTGATAGATTCTATTACGGTTTTGAAATATAGAAAAAACGAAGGAGTTATTGATGGGACAGAGTGTTCTGTTTGTCTTGGTGAGTTTCAAGAGGAAGAGAGTCTCAGGATTTTGCCTAAGTGTAGCCATGCTTTTCATATTCATTGCATCGATACTTGGCTTCGATCGCATCAGAATTGTCCATTGTGTAGGGCACCTGTGATCAATGATGCTGCTGCAGAGGTGAGTGTTACAGGCACTGAAAGTGATCAGGTTGGTTCAAATGTTTCTGGGGAGAGTCTGAACCAAGAGGGACAGATAGAAAATTTTGATAATGTAGGAGAATTTCAGGTTGTCAGAATTGATAATGATAATGATGGTGATTCTGTTGGTGTATCATCTAGTGAAAGATCATATAAAAATAACACTGCTTAG 783 0.3985 MLFHLRNLLHLYQCNDSPNPSPQQPPSYYQTDHRIHNIHTLHIALIGMACLVTTVMLLLTLAIFLRRHNHGVNGGRRNMPILFDVHGYRDSTSSDDGNHGDDDDERIIDHPVWFIRTIGLQQSVIDSITVLKYRKNEGVIDGTECSVCLGEFQEEESLRILPKCSHAFHIHCIDTWLRSHQNCPLCRAPVINDAAAEVSVTGTESDQVGSNVSGESLNQEGQIENFDNVGEFQVVRIDNDNDGDSVGVSSSERSYKNNTA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1334 260 PANTHER RING-H2 FINGER PROTEIN ATL54 17 236 - -
Psa7g1334 260 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 236 IPR044675 -
Psa7g1334 260 MobiDBLite consensus disorder prediction 243 260 - -
Psa7g1334 260 CDD RING-H2_PA-TM-RING 144 187 - -
Psa7g1334 260 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Psa7g1334 260 SMART ring_2 145 186 IPR001841 -
Psa7g1334 260 Pfam Ring finger domain 144 187 IPR001841 -
Psa7g1334 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 195 IPR013083 -
Psa7g1334 260 SUPERFAMILY RING/U-box 135 192 - -
Psa7g1334 260 MobiDBLite consensus disorder prediction 238 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1334 Psa-Chr7 98122754 98124177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1334 107 191 C3H Transcription Factor Family AT4G33565 69.412 7.45e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1334 - - mtr:MTR_8g089880 275.789