Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1323 ATGAAGAGACTTTCCAGCTCCGATTCTTTAGGTGCTCTCATCACAATCTGTCCACAAACAGAGGAACATAGTCCGAGGAACAACCACAGCAGTAGCAGCAACAACAACGTGTATGGAAGGGAATTTCAGTCGATGTTGGAAGGATTTGACGAAGAAGGATGTGTTGAAGAAGTAGGGCAAAAGAAACGAAGACTGAGTGTGGATCAAGTGAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCTGATAGGAAAGTGAAGCTTGCTCAAGAACTTGGTTTGCAACCAAGACAAGTTGCGGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAAACAAAACAGTTGGAAAGAGATTATGGAGTTCTTAAAGCTAACTTTGATGCACTTAAGGTTAATTATGAGACACTTCAACGTGATAATGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTACAAATGGAAGAAGAAAACACAACTACAGAAAGTGATGTTTGTGTAAAACAAGAGTTGATAACATTGCAAGACACAGAAAACACAGCTTCCGATGAAACGGCCATTCTTAGATCCGATTCTAAGGACATCTGTTTCAGAAACACCGAGGTTGTAGCTTCTCTGTTACCTGCGGATTTCAAAGACGGTTCTTCAGATAGCGACTCAAGCGCAATCTTGAACGAAGAAAACAATAACAGTCCCAAAGCAGCGATTTCTTCATCTGGGGTTCTTCAAAATCAAAGCTTTTTGATGTCTAATGGATCCTCTTCGTTGAAGTTTGGTGGTTCTTCATCTTCTTCGCCGTCGTCGATGAGTAATTGTTTTCAGTTTCAGAATGAGTATCAGACACAGTATGTGAAAATGGAAGAGCATAATTTTCTTAGTGCCGATGAGACTTGTAATTTCTTTTCCGACGAACAACCGCCGACGCTTCAATGGTATTGTTCGGAAGAGTGGAATTAA 972 0.4023 MKRLSSSDSLGALITICPQTEEHSPRNNHSSSSNNNVYGREFQSMLEGFDEEGCVEEVGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKVNYETLQRDNETLLKEVKELKSRLQMEEENTTTESDVCVKQELITLQDTENTASDETAILRSDSKDICFRNTEVVASLLPADFKDGSSDSDSSAILNEENNNSPKAAISSSGVLQNQSFLMSNGSSSLKFGGSSSSSPSSMSNCFQFQNEYQTQYVKMEEHNFLSADETCNFFSDEQPPTLQWYCSEEWN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1323 323 Gene3D - 59 123 - -
Psa7g1323 323 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Psa7g1323 323 SMART HOX_1 59 120 IPR001356 GO:0003677
Psa7g1323 323 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Psa7g1323 323 Coils Coil 129 167 - -
Psa7g1323 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 315 - -
Psa7g1323 323 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Psa7g1323 323 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Psa7g1323 323 CDD homeodomain 60 117 IPR001356 GO:0003677
Psa7g1323 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 315 IPR045224 GO:0003700
Psa7g1323 323 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Psa7g1323 323 SUPERFAMILY Homeodomain-like 59 118 IPR009057 -
Psa7g1323 323 Pfam Homeodomain 61 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1323 Psa-Chr7 97030520 97032794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1323 1 323 Homeobox Transcription Factor Family AT2G22430 46.154 5.31e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa7g1323 Homeodomain 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1323 K09338 - gmx:100796213 420.239