Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1308 ATGGATGAGGAAGAGCACGAGGTTTACGGAGGAGAGATCCCAGACGTCGGAGAGATGGAAGGAGACGTCGACATGCCCGCCGCCGACGATGATGCCAGCGGTATGAAGGAGCTCGACGAGATGAGGCGGCGCTTGAAGGAAATGGAAGATGAAGCCGCCGCTCTTCGCGATATGCACGCCAAGGTCGAGAAGGAGATTGGTTCCACTCAAGATCCTGCTGCTGCAGCTGCTTCTCAGGATAACAAGGAGGAGGCAGATGCTCGTTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGCGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAAGCTATCCTGTTGACTGAAACTGAATTGCATGGCCGACAATTGAAAGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATACCGTCCTAGGCGATTCAATCCTTACATGGCGTACGGCTTCAGGAGGCCTTATGCTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCTAGGTTTAGAAGGCCAAATCGATACATGCCATACTATTAG 651 0.4946 MDEEEHEVYGGEIPDVGEMEGDVDMPAADDDASGMKELDEMRRRLKEMEDEAAALRDMHAKVEKEIGSTQDPAAAAASQDNKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEAILLTETELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPYGYGKAPRFRRPNRYMPYY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1308 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Psa7g1308 216 CDD RRM_II_PABPs 89 160 - -
Psa7g1308 216 MobiDBLite consensus disorder prediction 1 20 - -
Psa7g1308 216 Coils Coil 31 65 - -
Psa7g1308 216 Gene3D - 15 171 IPR012677 -
Psa7g1308 216 SUPERFAMILY RNA-binding domain, RBD 78 184 IPR035979 GO:0003676
Psa7g1308 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 214 - -
Psa7g1308 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Psa7g1308 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Psa7g1308 216 PANTHER - 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1308 Psa-Chr7 95925720 95931372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1308 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 1.06e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1308 K14396 - gmx:100789721 399.053