Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa7g1306 | ATGGAAGCTTTCGGCGGTTACTTGGTTGATGAGAAAGCCGTTAGGGTTGAGAACGCTTTCTTAGATTTTCTCAAAAGTTTTAGATCCGGACAACGGAATGAACTATATTACGAAGCGGAGATTGAAGTGATGAGAGCTAACGAGTCCAACACCATGTTCATCGATTTCGAGCATGTCATCAGATTCAGTGATCTTCTTCAGAAAGCTATCTCCGATGAATATTTGAGGTTTGAACCTTACTTGCAGAACGCTTGCAAGAGGTTTGTTATGGAGCTCAAGCCAACTTTTATATCTGATGATAACCCTAACAAGGACATCAATGTTGCCTTCTATAACATTCCAATTGTTAAGAGGTTAAGAGAGTTGGCTACATCAGAGATTGGGAGGCTTGTATCTGTAACAGGAGTGGTAACAAGGACAAGTGAGGTTCGGCCCGAGCTTCTCCAAGGGACTTTCAAGTGTCTAGAATGTGGAGGGGTTATAAAGAATGTTGAGCAGCAGTTCAAGTATACTGAGCCAACAATCTGTCCGAATGCCACCTGTAACAATAGAACAAGGTGGGCTCTGCTGCGCCAAGAGAGCAAATTTACTGATTGGCAAAGGGTCAGAATGCAGGAAACTTCCAAAGAGATACCTGCGGGCTCTTTGCCAAGGTCATTGGATGTTATTCTCCGTCATGAGATTGTGGAACATGCTAGGGCTGGTGACACAGTGATTTTTACTGGCACTGTAATTGTCATACCTGATATATTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGTTCTTCATCTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTGGGAGTCAGAGACCTCTCATATCGTCTGGCTTTTATCGCTAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGGAAGAAGGATTCAGAGGAAGATGACCTGCTATTTTCTCAACAGGAACTGGATGAAGTTCAACGAATGAGGAACACCCCAGATTTCTTCACAAAACTTGTTGAGAGTGTTGCTCCTACTATTTTTGGTCATCAAGATATAAAGCGAGCAATCCTTCTTATGCTTATGAGTGGGGTCCATAAATCTACTCATGAAGGCATCAGCCTTAGAGGAGACATAAATGTTTGTATAGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTTCTCAAGTATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGTAAATCATCATCTGCTGCTGGTTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGAGAGTTTTGTATTGAGATGGACATAAGAGATCAGGTTGCAATTCATGAGGCAATGGAACAACAAACTATTAGTATCACTAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCCGCTGGAGGACGGTATGATAAGTCTAAGCCGCTGAAGTACAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTTGATCTTGTATACATTATGATTGATGACCCGGACGATAATACAGATTACCACATAGCTTCTCACATTGTGCGGGTTCATCAAAAGCGTGAAGATGCTCTTGCTCCAACATTCACTACAGCAGAACTGAAGCGTTATATAGCCTATGCAAAGACTCTTAAACCAAAGCTAACGTCAGATGCAAGAAAACTACTGGTAGACTCTTATGTTGCTCTCCGTAGGGCTGATACAAATCCTGGCAGTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCTTTAATCAGGCTGTCGGAGGCCATTGCACGGTGTCATTTGGATAATCAGGTACAACCTCGTCATGTTCGTTTAGCAGTAAAACTGCTGCAAACATCTATAATAAGAGTGGAGTCCAGTGAGATTGATCTATCTGAGTTTCAAGATCAAGATAGGGAGGAAGAAGCAGGCAGTGGTGATGGAAATAATAATAATAATGATGCTGATGGAACCAATGGTGATAATGAAAAAGCAGCTGATGAATCTAACCCCCAAAGAAAGAAATCAACTGTAACTGATGAATACTTTCAGAGGATTACCAGGGCCCTTGTCACACGTCTCAGACAACATGAGGAGACTGTGGTGGAACAAGGAAGTGACTTGGCTGGGATGAGGCAACGAGATTTGATTAAATGGTATGTAGACCAGCAGAATGAGAAAAATAACTACAGTTCCATAGAGGAGGCGAAAACTGAAGTTTCCCAAATTAAAGCAATTATAGAGATTTTAATTCGAAGAGAGGGGCATTTGATAGTAGTAGATGATGGGAGACAAGCAGCAGCAGAGGCTGCTGGTGCAGAACAAACCGAGTCTGCGGCTAGAAATGATAGAATTTTGGCTGTAGCTCCTCATTATGTTGTTGACTGA | 2427 | 0.4277 | MEAFGGYLVDEKAVRVENAFLDFLKSFRSGQRNELYYEAEIEVMRANESNTMFIDFEHVIRFSDLLQKAISDEYLRFEPYLQNACKRFVMELKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRTRWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGSSSGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDSEEDDLLFSQQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDDPDDNTDYHIASHIVRVHQKREDALAPTFTTAELKRYIAYAKTLKPKLTSDARKLLVDSYVALRRADTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLQTSIIRVESSEIDLSEFQDQDREEEAGSGDGNNNNNDADGTNGDNEKAADESNPQRKKSTVTDEYFQRITRALVTRLRQHEETVVEQGSDLAGMRQRDLIKWYVDQQNEKNNYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQAAAEAAGAEQTESAARNDRILAVAPHYVVD* | 809 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Psa7g1306 | 808 | CDD | MCM6 | 346 | 633 | - | - | |
| Psa7g1306 | 808 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 757 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | MobiDBLite | consensus disorder prediction | 645 | 692 | - | - | |
| Psa7g1306 | 808 | SMART | mcm | 115 | 635 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | Gene3D | - | 8 | 115 | - | - | |
| Psa7g1306 | 808 | MobiDBLite | consensus disorder prediction | 673 | 692 | - | - | |
| Psa7g1306 | 808 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Psa7g1306 | 808 | ProSiteProfiles | MCM family domain profile. | 343 | 530 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | Gene3D | - | 328 | 639 | IPR027417 | - | |
| Psa7g1306 | 808 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Psa7g1306 | 808 | Gene3D | - | 146 | 197 | - | - | |
| Psa7g1306 | 808 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 638 | IPR027417 | - | |
| Psa7g1306 | 808 | Pfam | MCM6 C-terminal winged-helix domain | 687 | 806 | IPR041024 | - | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 399 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 453 | 466 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 477 | 489 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 504 | 512 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | Gene3D | - | 684 | 808 | - | - | |
| Psa7g1306 | 808 | Coils | Coil | 317 | 337 | - | - | |
| Psa7g1306 | 808 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Psa7g1306 | 808 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 10 | 757 | - | - | |
| Psa7g1306 | 808 | Pfam | MCM P-loop domain | 331 | 534 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Psa7g1306 | 808 | Coils | Coil | 746 | 766 | - | - | |
| Psa7g1306 | 808 | Pfam | MCM AAA-lid domain | 549 | 634 | IPR041562 | - | |
| Psa7g1306 | 808 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa7g1306 | Psa-Chr7 | 95848508 | 95853326 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa7g1306 | 1 | 808 | Core DNA Replication Machinery Family | AT5G44635 | 69.347 | 0.0 | 1203 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa7g1306 | K02542 | - | gmx:100787290 | 1312.75 |