Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1266 ATGCAAGATCACTCTGAAATAACTAATGTTCCTCTTCAAAACCTCTCACAACTAAGCACCAAAATGGATTCTCTTCAATGCTTCATATCTCAATCCATCAAAACCAAAACTCTCCTCCCCAAACAACACTTAGACACACTCTCCAACCAAATCTCCTCAACCATTTGCGAAGTCATCATCAATGCAACCGCTCTTCTTGCCACGTGTCATGTAACAACACCGGCCGAGTATTACACGACACGTGGCAAAAACGACATTTGCGTTTACGATGATGCAACAAATTACGAAGATTCCGACATAGTGGAACTCGATGCCGTGGAGTTACTCGCTAAAAATTTTCATTTATGTGAGATTTGCGGGAAAGGATTCACGCGCGACGCGAATTTACGTATGCACATGCGGGCTCACGGGGAACAGTTCAAGACTCCAGAAGCTTTGCGTGGCGTGAGGGAAACGCGCTTGACCTCGACGCGATTTTCTTGTCCGTACGATGGATGCAAAAGGAACAAGTTACACAGGAAGTTCACGCCGTTGAAGTCGGTGTTCTGTTTGAGGAACCATTTTAAGAGAAGTCATTGTCCGAAAACTCACACGTGTGATCGGTGTCGGAGAAAGAGCTTTGCGGTGGTTTCGGATTTGAAGAGTCATGTGAAGCAGTGTAAGGGAGAGTCCACGTGGAAGTGTTCCTGCGGAACTACGTTTTCTAGGAAGGAGAAACTGTTTGGACACGTGGCACGGTTTGAGGGGCATTCACCGGTGTTTGTTGTGGCGGCGGCAGAAGAAGGGAGAGGACAATCCGTGGCGGCGGAAGGGGAAGGTGTGGCCGTGGGTGCAAATTTGACTAACGAAAGTGATGGGTTACCTGAAGGTTTCTTTGATGATTTGGATAAGTTTTGGGTTTGA 903 0.4707 MQDHSEITNVPLQNLSQLSTKMDSLQCFISQSIKTKTLLPKQHLDTLSNQISSTICEVIINATALLATCHVTTPAEYYTTRGKNDICVYDDATNYEDSDIVELDAVELLAKNFHLCEICGKGFTRDANLRMHMRAHGEQFKTPEALRGVRETRLTSTRFSCPYDGCKRNKLHRKFTPLKSVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCKGESTWKCSCGTTFSRKEKLFGHVARFEGHSPVFVVAAAEEGRGQSVAAEGEGVAVGANLTNESDGLPEGFFDDLDKFWV* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1266 300 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 91 295 IPR044300 GO:0010044|GO:0010447
Psa7g1266 300 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 9 76 IPR044300 GO:0010044|GO:0010447
Psa7g1266 300 SMART c2h2final6 197 218 IPR013087 -
Psa7g1266 300 SMART c2h2final6 159 192 IPR013087 -
Psa7g1266 300 SMART c2h2final6 114 136 IPR013087 -
Psa7g1266 300 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Psa7g1266 300 Gene3D Classic Zinc Finger 111 144 - -
Psa7g1266 300 SUPERFAMILY beta-beta-alpha zinc fingers 112 136 IPR036236 -
Psa7g1266 300 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 91 295 - -
Psa7g1266 300 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 9 76 - -
Psa7g1266 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Psa7g1266 300 Pfam Zinc-finger of C2H2 type 116 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1266 Psa-Chr7 93169296 93170635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1266 99 285 C2H2 Transcription Factor Family AT1G34370 48.744 7.94e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g1266 zf-met 0.0031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g1266 - - gmx:100798348 338.961